View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_363 (Length: 212)

Name: NF10233A_low_363
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_363
NF10233A_low_363
[»] chr5 (3 HSPs)
chr5 (17-197)||(21221448-21221628)
chr5 (94-127)||(24797395-24797428)
chr5 (57-122)||(25427751-25427816)
[»] chr4 (3 HSPs)
chr4 (88-127)||(15291974-15292013)
chr4 (52-125)||(15423058-15423131)
chr4 (67-127)||(44660682-44660742)
[»] chr6 (3 HSPs)
chr6 (57-135)||(18406897-18406975)
chr6 (88-134)||(35275040-35275086)
chr6 (88-136)||(16648921-16648969)
[»] scaffold0218 (1 HSPs)
scaffold0218 (30-127)||(2771-2868)
[»] scaffold0122 (1 HSPs)
scaffold0122 (57-122)||(38772-38837)
[»] chr8 (2 HSPs)
chr8 (88-125)||(21195763-21195800)
chr8 (88-136)||(16876345-16876393)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 21221628 - 21221448
Alignment:
Q  17 gacatctcaaatcaaaatcaaaatcctttaaagactccatccaccttcgttgtctcatgtttagatccctatgatcgaataaatacttcaaactcttatg 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21221628 gacatctcaaatcaaaatcaaaatcctttaaatactccatccaccttctttgtctcatgtttagatccctatgatcgaataaatacttcaaactcttatg 21221529  T
Q  117 gtcactgaacaaatcaaattctgctctatataaatgatgcctccatactttcaatgcaaaaactacggctgccaacaccaa 197  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  21221528 gtcactgaacaaatcaaattgtgctctatataaatgatgcctccatacttttaatgcaaaaacaacggctgccaactccaa 21221448  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 24797428 - 24797395
Alignment:
Q  94 aataaatacttcaaactcttatggtcactgaaca 127  Q
    ||||||||||||||||| ||||||||||||||||    
T  24797428 aataaatacttcaaacttttatggtcactgaaca 24797395  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 25427751 - 25427816
Alignment:
Q  57 ccaccttcgttgtctcatgtttagatccctatgatcgaataaatacttcaaactcttatggtcact 122  Q
    ||||||||| ||||||||||| |  ||| | |||||||| | |||||||||||||||||| |||||    
T  25427751 ccaccttcgctgtctcatgttcaattccttctgatcgaacagatacttcaaactcttatgatcact 25427816  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 15292013 - 15291974
Alignment:
Q  88 tgatcgaataaatacttcaaactcttatggtcactgaaca 127  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  15292013 tgatcaaacaaatacttcaaactcttatggtcactgaaca 15291974  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 15423131 - 15423058
Alignment:
Q  52 tccatccaccttcgttgtctcatgtttagatccctatgatcgaataaatacttcaaactcttatggtcactgaa 125  Q
    |||||||||||||| || ||||| || || ||| | |||||||||| ||| ||||| |||||||| ||||||||    
T  15423131 tccatccaccttcgatgcctcatattgagctccttctgatcgaatagatatttcaagctcttatgatcactgaa 15423058  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 44660742 - 44660682
Alignment:
Q  67 tgtctcatgtttagatccctatgatcgaataaatacttcaaactcttatggtcactgaaca 127  Q
    ||||||||||| || ||| | || || ||||||||||||||||| ||||| ||||||||||    
T  44660742 tgtctcatgttcagttccttctggtcaaataaatacttcaaacttttatgatcactgaaca 44660682  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 18406975 - 18406897
Alignment:
Q  57 ccaccttcgttgtctcatgtttagatccctatgatcgaataaatacttcaaactcttatggtcactgaacaaatcaaat 135  Q
    ||||||||| |||||||||||    ||| | |||||||| | |||||||||||||||||| ||||| |||| |||||||    
T  18406975 ccaccttcgctgtctcatgttccattccttctgatcgaacagatacttcaaactcttatgatcactaaacacatcaaat 18406897  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 35275086 - 35275040
Alignment:
Q  88 tgatcgaataaatacttcaaactcttatggtcactgaacaaatcaaa 134  Q
    ||||| || ||||||||||||||||| ||||||||||||| ||||||    
T  35275086 tgatcaaacaaatacttcaaactcttgtggtcactgaacacatcaaa 35275040  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 16648969 - 16648921
Alignment:
Q  88 tgatcgaataaatacttcaaactcttatggtcactgaacaaatcaaatt 136  Q
    ||||| || ||||||||||||||||| |||||||||||||  |||||||    
T  16648969 tgatcaaacaaatacttcaaactcttgtggtcactgaacacctcaaatt 16648921  T

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Target: scaffold0218 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 2868 - 2771
Alignment:
Q  30 aaaatcaaaatcctttaaagactccatccaccttcgttgtctcatgtttagatccctatgatcgaataaatacttcaaactcttatggtcactgaaca 127  Q
    ||||||||||||||| | | |||||| |||||||| ||| ||||| || |  ||  | ||||| || ||||||||||||||||| |||||||| ||||    
T  2868 aaaatcaaaatccttaagatactccaaccaccttctttgcctcatattcaactctttctgatcaaacaaatacttcaaactcttgtggtcacttaaca 2771  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 38837 - 38772
Alignment:
Q  57 ccaccttcgttgtctcatgtttagatccctatgatcgaataaatacttcaaactcttatggtcact 122  Q
    ||||||||| ||||||||||| |  ||| | |||||||| |||||||||||||| ||||| |||||    
T  38837 ccaccttcgatgtctcatgttcaattccttctgatcgaacaaatacttcaaactgttatgctcact 38772  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 21195800 - 21195763
Alignment:
Q  88 tgatcgaataaatacttcaaactcttatggtcactgaa 125  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  21195800 tgatcaaataagtacttcaaactcttatggtcactgaa 21195763  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 16876393 - 16876345
Alignment:
Q  88 tgatcgaataaatacttcaaactcttatggtcactgaacaaatcaaatt 136  Q
    ||||| || ||||||||||||||||| |||||||||||||  |||||||    
T  16876393 tgatcaaacaaatacttcaaactcttgtggtcactgaacacctcaaatt 16876345  T

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