View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_369 (Length: 211)
Name: NF10233A_low_369
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_369 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 46844707 - 46844532
Alignment:
| Q |
36 |
atcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattcc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46844707 |
atcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattcc |
46844608 |
T |
|
| Q |
136 |
ttcaaggaatcgttctaattctaatcggacacaaattagcaaatcatactttcctttgatgtaataagacagacac |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46844607 |
ttcaaggaatcggtctaattctaatcggacacaaattagcaaattatactttcctttgatgtaataagacagacac |
46844532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 48942 - 48986
Alignment:
| Q |
37 |
tcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
81 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||||||||||| |
|
|
| T |
48942 |
tcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University