View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_378 (Length: 206)

Name: NF10233A_low_378
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_378
NF10233A_low_378
[»] chr6 (15 HSPs)
chr6 (15-206)||(24767426-24767617)
chr6 (15-206)||(18651236-18651427)
chr6 (15-206)||(2553584-2553775)
chr6 (38-206)||(12734072-12734240)
chr6 (15-157)||(21168194-21168337)
chr6 (15-182)||(15958815-15958982)
chr6 (40-128)||(17606361-17606449)
chr6 (41-142)||(17579109-17579210)
chr6 (41-142)||(17573683-17573784)
chr6 (15-132)||(21630109-21630226)
chr6 (15-128)||(10577251-10577364)
chr6 (15-182)||(20883035-20883202)
chr6 (36-175)||(13937678-13937817)
chr6 (15-184)||(14372993-14373162)
chr6 (15-116)||(33185473-33185574)
[»] chr7 (10 HSPs)
chr7 (15-206)||(47876930-47877121)
chr7 (15-206)||(235439-235632)
chr7 (15-206)||(11277254-11277445)
chr7 (15-206)||(37919491-37919682)
chr7 (15-199)||(17720589-17720773)
chr7 (15-206)||(29967922-29968113)
chr7 (15-176)||(4938130-4938291)
chr7 (40-128)||(18532653-18532741)
chr7 (40-104)||(25619508-25619572)
chr7 (40-104)||(37254807-37254871)
[»] chr5 (23 HSPs)
chr5 (15-206)||(28535677-28535868)
chr5 (15-205)||(35983793-35983983)
chr5 (15-206)||(42928078-42928269)
chr5 (16-206)||(23238331-23238521)
chr5 (15-206)||(30732316-30732507)
chr5 (15-206)||(12825146-12825337)
chr5 (31-206)||(8227973-8228148)
chr5 (15-206)||(27117163-27117354)
chr5 (15-176)||(42513697-42513858)
chr5 (45-182)||(19255154-19255292)
chr5 (15-152)||(31641513-31641649)
chr5 (40-142)||(25857451-25857553)
chr5 (15-132)||(27767063-27767180)
chr5 (15-142)||(8300184-8300311)
chr5 (15-128)||(33385376-33385489)
chr5 (99-206)||(12820035-12820142)
chr5 (15-128)||(10776789-10776903)
chr5 (15-146)||(26072899-26073030)
chr5 (36-175)||(33169636-33169775)
chr5 (15-104)||(18359094-18359183)
chr5 (17-182)||(27165956-27166121)
chr5 (136-170)||(27795466-27795500)
chr5 (43-152)||(18089791-18089900)
[»] chr4 (16 HSPs)
chr4 (15-206)||(7403860-7404051)
chr4 (15-206)||(1828542-1828733)
chr4 (15-206)||(15740168-15740359)
chr4 (15-206)||(19755211-19755405)
chr4 (15-206)||(19784401-19784595)
chr4 (15-206)||(47685897-47686088)
chr4 (15-176)||(13270893-13271054)
chr4 (15-176)||(23642593-23642754)
chr4 (15-156)||(47418801-47418942)
chr4 (15-146)||(11587200-11587331)
chr4 (40-128)||(45472736-45472824)
chr4 (41-149)||(55725714-55725822)
chr4 (15-128)||(12697838-12697951)
chr4 (40-107)||(8361146-8361213)
chr4 (41-104)||(20002774-20002837)
chr4 (36-171)||(46145657-46145792)
[»] chr3 (22 HSPs)
chr3 (15-206)||(34332817-34333008)
chr3 (15-206)||(40930530-40930721)
chr3 (15-206)||(19920231-19920422)
chr3 (15-176)||(2364254-2364415)
chr3 (15-206)||(7312723-7312914)
chr3 (15-156)||(10323573-10323714)
chr3 (50-195)||(7032276-7032421)
chr3 (15-128)||(29523747-29523860)
chr3 (35-182)||(26771011-26771158)
chr3 (15-128)||(11203844-11203957)
chr3 (15-179)||(15312557-15312721)
chr3 (15-173)||(2755822-2755980)
chr3 (15-128)||(12342228-12342340)
chr3 (31-180)||(17097894-17098043)
chr3 (15-128)||(33496572-33496685)
chr3 (40-104)||(35214398-35214462)
chr3 (36-175)||(963186-963325)
chr3 (44-128)||(36801106-36801190)
chr3 (51-142)||(7031055-7031146)
chr3 (40-98)||(19890733-19890791)
chr3 (36-169)||(3140836-3140969)
chr3 (28-149)||(16178952-16179073)
[»] chr8 (17 HSPs)
chr8 (15-206)||(13396335-13396526)
chr8 (15-206)||(41665371-41665562)
chr8 (15-206)||(9922548-9922739)
chr8 (19-206)||(32266511-32266698)
chr8 (15-176)||(7924363-7924524)
chr8 (15-183)||(8299773-8299941)
chr8 (15-206)||(172050-172241)
chr8 (15-142)||(20824307-20824434)
chr8 (40-128)||(17699507-17699595)
chr8 (15-206)||(13200070-13200261)
chr8 (15-128)||(37434157-37434270)
chr8 (15-106)||(2170389-2170480)
chr8 (45-180)||(5181643-5181778)
chr8 (40-107)||(43270496-43270563)
chr8 (63-181)||(34137013-34137131)
chr8 (76-183)||(2529856-2529963)
chr8 (136-170)||(13879610-13879644)
[»] chr2 (9 HSPs)
chr2 (15-182)||(41206987-41207154)
chr2 (15-184)||(4552138-4552307)
chr2 (40-206)||(15917601-15917767)
chr2 (45-182)||(17764994-17765131)
chr2 (41-183)||(12645506-12645648)
chr2 (15-184)||(28252689-28252858)
chr2 (40-102)||(10999978-11000040)
chr2 (40-128)||(14439777-14439865)
chr2 (15-103)||(38604376-38604464)
[»] chr1 (9 HSPs)
chr1 (15-206)||(51052427-51052618)
chr1 (15-206)||(11909107-11909298)
chr1 (15-169)||(35541033-35541187)
chr1 (15-176)||(6050580-6050741)
chr1 (40-142)||(16917836-16917938)
chr1 (40-105)||(43388415-43388480)
chr1 (15-180)||(47623079-47623244)
chr1 (15-91)||(28351776-28351852)
chr1 (40-104)||(37191237-37191301)
[»] scaffold0472 (1 HSPs)
scaffold0472 (15-206)||(3199-3390)
[»] scaffold0369 (1 HSPs)
scaffold0369 (15-200)||(11207-11392)
[»] scaffold0034 (1 HSPs)
scaffold0034 (15-176)||(105845-106006)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 24767426 - 24767617
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24767426 gacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgacgacttcttagg 24767525  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24767526 gatcggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaacgttgaaga 24767617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 18651236 - 18651427
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  18651236 gacatcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcgacttctgagg 18651335  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||| | ||| |||||||  ||||||||    
T  18651336 gatcggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtgtgtctctggatgcgggaccgttgaaga 18651427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 2553775 - 2553584
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| | |      
T  2553775 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 2553676  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| || ||||| ||||||||    
T  2553675 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaaga 2553584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 12734240 - 12734072
Alignment:
Q  38 tacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataa 137  Q
    ||||||| |||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||||||  |||    
T  12734240 tacatcataatatggatttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 12734141  T
Q  138 tttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    ||||| ||  ||||||||| || || |||||| |||||| ||||||| | | || |||||||| |||||    
T  12734140 tttggtaacccgtggcattctatctctggaggagcggttatgtgtttctagatgtgggaatgtcgaaga 12734072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 21168337 - 21168194
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||||| ||||||| |||||||| |||||| ||||| |        
T  21168337 gacatcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtatctatcctagcttggagacttttgcaa 21168238  T
Q  115 gatcagttacctac-aaaaaataatttggcaaatcgtggcattt 157  Q
    ||||  |||||||| |||||| || |||||||| ||||||||||    
T  21168237 gatcgattacctacaaaaaaaaaaattggcaaaccgtggcattt 21168194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 15958815 - 15958982
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || |  |||||||||| ||||||| ||||||| | |||||||||||||||| | ||||||||||| ||||||||||| ||| | |||    
T  15958815 gacatcacaggaacaacttcagttacatccaaatatgaagttaatatggcataaacaggttcctcttaaagtctctattcttgcttggcggcttttgagg 15958914  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgt 182  Q
    ||||| |||||||| |||   ||||||||||| | ||| ||  | |||||||||| || |||||||||    
T  15958915 gatcatttacctacgaaagcaaatttggcaaaccatggtatcattcctttggaggtgcagttgtgtgt 15958982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 17606361 - 17606449
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 128  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||| ||||||||    
T  17606361 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcatttacctac 17606449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 17579109 - 17579210
Alignment:
Q  41 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 140  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||  |||||||| |||  ||||||    
T  17579109 atcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaattt 17579208  T
Q  141 gg 142  Q
    ||    
T  17579209 gg 17579210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 17573683 - 17573784
Alignment:
Q  41 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 140  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||  ||||||||||||||||||||  | |||||||  |||||||| |||  ||||||    
T  17573683 atcaaaatatggagttaatttggcataaacaggttcctttaaaagattctatccttgcttggcgactgttgagggatcgcttacctactaaatctaattt 17573782  T
Q  141 gg 142  Q
    ||    
T  17573783 gg 17573784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 21630109 - 21630226
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||| ||||||||| | ||||| |||||||||| |||||||||  | |||    
T  21630109 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaccaggttcctttaaaagtttctatccttgtttggcgactattgagg 21630208  T
Q  115 gatcagttacctacaaaa 132  Q
    ||||  ||||||||||||    
T  21630209 gatcgtttacctacaaaa 21630226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 10577251 - 10577364
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | ||||||||||| |||||||||| |||||||||||||||| | ||||| | ||||||||||||||||||  | |||    
T  10577251 gacatcacaggaacaacctcatgttcatcaaaatatagagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagg 10577350  T
Q  115 gatcagttacctac 128  Q
    ||||  ||||||||    
T  10577351 gatcgtttacctac 10577364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 20883035 - 20883202
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||||||||||| | ||||||| |||||||| | ||||| ||||||||||||||||| ||  | |||    
T  20883035 gacatcacaggaacaaccacatgttcatcaaaatatggagttaatctggcataaataggttcctttaaaagtttctatccttgcttggcggctgttgagg 20883134  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgt 182  Q
    |||   |||||||| |||   || |||| | ||||||||||| || || ||||||| ||||| |||||    
T  20883135 gattgtttacctactaaatcgaacttggtagatcgtggcattatatctgtggaggctcggttttgtgt 20883202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 36 - 175
Target Start/End: Complemental strand, 13937817 - 13937678
Alignment:
Q  36 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 135  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || ||||| | ||||||||| ||| |     
T  13937817 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 13937718  T
Q  136 aatttggcaaatcgtggcattttacctttggaggcgcggt 175  Q
    |||||||||| | ||||  | ||| ||||||||| |||||    
T  13937717 aatttggcaagttgtggggtcttatctttggaggagcggt 13937678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 14372993 - 14373162
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||| ||||| ||||| |||||||||     |||||| ||||||| |||||||||||| ||| | ||||| ||||| ||||||||||  ||| | |||    
T  14372993 gacatcccaggaacagcctcagttacattcttctatggatttaatttggcataaacaggtacctctaaaagtatctattcttgcttggcagcttttgagg 14373092  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgttt 184  Q
     |    |||||||| |||   ||||||||||| ||||||||| |  || |||||| ||||||||||||||    
T  14373093 aacggcttacctacgaaaggaaatttggcaaaccgtggcattatttctatggaggggcggttgtgtgttt 14373162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 33185574 - 33185473
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||| ||||||| | ||| |||||| ||||  |||| ||||||| ||||||||| || ||| | |||||||||||  ||||||| ||| | ||||||    
T  33185574 gacatcataggagcatctccatttacattaaaacttggaattaatttggcataaacatgtccctctgaaagtctctatttttgcttgacgaatgcttagg 33185475  T
Q  115 ga 116  Q
    ||    
T  33185474 ga 33185473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 47877121 - 47876930
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||     
T  47877121 gacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgaga 47877022  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  47877021 gatcagttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgcgggaacgttgaaga 47876930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 235439 - 235632
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||    
T  235439 gacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtctctatccttgcttggcgacttctgagg 235538  T
Q  115 gatcagttacctac--aaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| |||||||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  235539 gatcggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggttgcgagaacgttgaaga 235632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 11277254 - 11277445
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| | ||     
T  11277254 gacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 11277353  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||    
T  11277354 gatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaaga 11277445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 37919682 - 37919491
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||| ||||||||  ||||| ||||||||| | |||||||||||||| ||||||| |||||||||||||||||||| || ||     
T  37919682 gacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 37919583  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | |||| ||||| ||||||||    
T  37919582 gattggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtgtgtttctagttgtgggaacgttgaaga 37919491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 17720773 - 17720589
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||||||||| || |||||||||||  |||||||||||| ||||| |||||||||| ||||||| ||||||||||| ||||||||||| |||    
T  17720773 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatggcgacttctgagg 17720674  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatg 199  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||| | |||| |||||||    
T  17720673 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctagttgtgggaatg 17720589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 29968113 - 29967922
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||| ||||||||||| || | |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||  ||||| | ||     
T  29968113 gacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgaggacttttgaga 29968014  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||    
T  29968013 gatcggttacctacgaaaagtaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaaga 29967922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 4938130 - 4938291
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  4938130 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 4938229  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 176  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  4938230 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 4938291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 18532741 - 18532653
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 128  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| | ||||||||||||||||||  | |||||||  ||||||||    
T  18532741 catcaaaatatggagttaatctcgcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 18532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 25619572 - 25619508
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 104  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| |||||||||||||||||    
T  25619572 catcaaaatatggagttaatatggcataaacaggttcctttaaaagtttctatccttgcttggcg 25619508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 37254871 - 37254807
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 104  Q
    |||||||||||||||||||| | ||||||||||||| || | ||||| || ||||||||||||||    
T  37254871 catcaaaatatggagttaatctggcataaacaggttactttaaaagtttcaatccttgcttggcg 37254807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 28535677 - 28535868
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||||| |||    
T  28535677 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatccttgcttggcgacttctgagg 28535776  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |||||| |||||||| |||||    
T  28535777 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttctggttgtgggaatgtagaaga 28535868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 35983793 - 35983983
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||| || || |||||||||| ||||||| ||||||||||||||||||||||| |||    
T  35983793 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 35983892  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaag 205  Q
     ||| ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  35983893 aatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttttggttgtgggaatgtagaag 35983983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 42928269 - 42928078
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||| |||||| ||||| |||    
T  42928269 gacatcgcaggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtctctatccttgtttggcggcttctgagg 42928170  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| |||| ||||||||||||||||| ||||  ||||||||||||| ||||||| |||||||||||| | ||| |||||||| ||||||||    
T  42928169 gatcggttaactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtgtgtctctggatgcgggaacgttgaaga 42928078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 23238521 - 23238331
Alignment:
Q  16 acatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttaggg 115  Q
    |||||||||||||| ||||||||||| || |||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||| ||||| | || |    
T  23238521 acatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtttctatccttgcttggagacttttgagag 23238422  T
Q  116 atcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    ||| ||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||||||||| ||| || ||||| ||||||||    
T  23238421 atcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaaga 23238331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 30732316 - 30732507
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||| |||    
T  30732316 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatctttgcttggcgacttctgagg 30732415  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||||| ||||||| ||| || |||| ||| |||||    
T  30732416 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaaga 30732507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 12825337 - 12825146
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||| |||||| ||||||| | ||||||||||||||||||||| |||    
T  12825337 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctcaaagtatgtatccttgcttggcgacttctgagg 12825238  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||||| ||||||| ||| || |||| ||| |||||    
T  12825237 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaaga 12825146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 8228148 - 8227973
Alignment:
Q  31 ccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaa 130  Q
    ||||||||||| || ||||||||||||||||  ||||||||||||||| ||||||| ||||||||||||||| ||||| | || |||| ||||||||| |    
T  8228148 ccccagttacaccataatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacga 8228049  T
Q  131 aaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    ||| |||||||||||| |||| |||||||||||||||||||||||||||||||| ||| || | ||| ||||||||    
T  8228048 aaagtaatttggcaaaccgtgacattttacctttggaggcgcggttgtgtgtttctggatgtgagaacgttgaaga 8227973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 27117163 - 27117354
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||  ||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  27117163 gacatcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 27117262  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    || | |||||| ||||||  |||||||| ||| ||||||||| || || |||||| |||||| ||||||| ||| || |||||||| |||||    
T  27117263 gaccggttacccacaaaacttaatttggtaaaccgtggcattctatctatggaggagcggttatgtgtttctggctgtgggaatgtcgaaga 27117354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 42513858 - 42513697
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  42513858 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 42513759  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 176  Q
    |||| |||||||||||||  ||||||||||||||||| |||| || || |||||| ||||||    
T  42513758 gatcggttacctacaaaacttaatttggcaaatcgtgacattctatctgtggaggagcggtt 42513697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 45 - 182
Target Start/End: Original strand, 19255154 - 19255292
Alignment:
Q  45 aaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggca 144  Q
    ||||||||||||||||| |||||||||| || || ||||||| |||||||||||||||||  |||| ||||||| |||||||||||||||||||||||||    
T  19255154 aaatatggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggca 19255253  T
Q  145 aatcgtggcattttacctttggag-gcgcggttgtgtgt 182  Q
    ||| |||||||| | || |||||| ||||||||||||||    
T  19255254 aattgtggcattattcccttggagcgcgcggttgtgtgt 19255292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 31641649 - 31641513
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||| ||||| |||||||||| | ||||| ||||||||||| ||| |||| || |||    
T  31641649 gacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttctatccttgcatggagactactgagg 31641551  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtgg 152  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  31641550 gatcggttacctacaaaaaataatttggcaaaccgtgg 31641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 25857451 - 25857553
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatt 139  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||  |||||||| |||  |||||    
T  25857451 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatt 25857550  T
Q  140 tgg 142  Q
    |||    
T  25857551 tgg 25857553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 27767180 - 27767063
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||||||||||  | |||    
T  27767180 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagg 27767081  T
Q  115 gatcagttacctacaaaa 132  Q
    ||||  ||||||||||||    
T  27767080 gatcgtttacctacaaaa 27767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 8300184 - 8300311
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||| |||||||||  | |||    
T  8300184 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagg 8300283  T
Q  115 gatcagttacctacaaaaaataatttgg 142  Q
    ||||  |||||||| |||  ||||||||    
T  8300284 gatcgcttacctactaaatctaatttgg 8300311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 33385376 - 33385489
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||  | ||||| ||||||||||||||||||||  | |||    
T  33385376 gacatcacaggaacaacctcatattcatcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgttgagg 33385475  T
Q  115 gatcagttacctac 128  Q
    ||||  ||||||||    
T  33385476 gatcgtttacctac 33385489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 12820035 - 12820142
Alignment:
Q  99 ttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaat 198  Q
    |||||||||| | ||||||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||||| ||||||| ||| || |||| |    
T  12820035 ttggcgacttatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggatt 12820134  T
Q  199 gttgaaga 206  Q
    || |||||    
T  12820135 gtcgaaga 12820142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 10776903 - 10776789
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaa-atatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttag 113  Q
    |||||||||||| || || ||  | ||||||| ||||||||||||||| |||||||||||||||  | ||||| |||||||||||||||||||| || ||    
T  10776903 gacatcacaggaacaacctcatgttcatcaaatatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgag 10776804  T
Q  114 ggatcagttacctac 128  Q
    |||||  ||||||||    
T  10776803 ggatcgtttacctac 10776789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 26073030 - 26072899
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||| ||||| |||||||| || ||||||||| |||||||||||| ||||||| | |||||| | |||||| ||||| ||| |||||||||  | |||    
T  26073030 gacatcgcaggaacagccccatttgcatcaaaatttggagttaatttggcataaatatgttcctttgaaagtccctatctttgtttggcgactgttgagg 26072931  T
Q  115 gatcagttacctacaaaaaataatttggcaaa 146  Q
    ||||  |||||||| ||| | || ||||||||    
T  26072930 gatcgattacctactaaagagaaattggcaaa 26072899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 175
Target Start/End: Complemental strand, 33169775 - 33169636
Alignment:
Q  36 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 135  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || ||||| | ||||||||| ||| |     
T  33169775 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 33169676  T
Q  136 aatttggcaaatcgtggcattttacctttggaggcgcggt 175  Q
    |||||||||| ||||||  | ||| ||||||||| |||||    
T  33169675 aatttggcaagtcgtggggtcttatctttggaggagcggt 33169636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 18359094 - 18359183
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 104  Q
    |||||||||||| || || ||  | |||||||||||||||||||| | |||||||||||||||| | ||||| || ||||||||||||||    
T  18359094 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatctagcataaacaggttcctttaaaagtttcaatccttgcttggcg 18359183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 27165956 - 27166121
Alignment:
Q  17 catcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttaggga 116  Q
    |||||||||| || ||| | ||||||||||||||||| ||||||| |||  ||||||| ||| | |||||||||||| | | |||||||   || | |||    
T  27165956 catcacaggaacaacccaatttacatcaaaatatggaattaatttggcaccaacaggtacctctaaaagtctctatcttcgtttggcgaacgctgaagga 27166055  T
Q  117 tcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgt 182  Q
    ||  ||||||| ||||   |||||||||| |||||| ||| | |||||||| |||| |||||||||    
T  27166056 tcgtttacctataaaagcaaatttggcaagtcgtggaattcttcctttggaagcgcagttgtgtgt 27166121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 27795500 - 27795466
Alignment:
Q  136 aatttggcaaatcgtggcattttacctttggaggc 170  Q
    |||||||||||||||||||||||||| ||||||||    
T  27795500 aatttggcaaatcgtggcattttaccgttggaggc 27795466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 18089791 - 18089900
Alignment:
Q  43 caaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttgg 142  Q
    |||||| |||||||||||| ||| |||||||| ||  | |||||||||||| ||||||| |||||  | || ||||  |||||||| |   | |||||||    
T  18089791 caaaatttggagttaatttggcacaaacaggtaccgttgaaagtctctatctttgcttgacgactattgagagatcgtttacctactaggcaaaatttgg 18089890  T
Q  143 caaatcgtgg 152  Q
    ||||||||||    
T  18089891 caaatcgtgg 18089900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 7404051 - 7403860
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||| |||    
T  7404051 gacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtctctatccttgcttggcgacttctgagg 7403952  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| | ||| |||||||| ||||||||    
T  7403951 gatcggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtgtgtctctggatgcgggaacgttgaaga 7403860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 1828542 - 1828733
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||  |  |     
T  1828542 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagactattgcga 1828641  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||  |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  1828642 gataggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttgaaga 1828733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 15740359 - 15740168
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||| |  |     
T  15740359 gacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgcga 15740260  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||| ||| || ||||||||| ||||    
T  15740259 gatcggttacctacaaaaaataatttgacaagccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttaaaga 15740168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 19755405 - 19755211
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||| ||||||||||| || |||||  ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| || ||     
T  19755405 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19755306  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcatt---ttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||||||||||||||||||||| |||| ||||   |||||||||||||||||||||||||||| ||| || ||||  ||||||||    
T  19755305 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaaga 19755211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 19784401 - 19784595
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||| ||||||||||| || |||||  ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| || ||     
T  19784401 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19784500  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcatt---ttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||||||||||||||||||||| |||| ||||   |||||||||||||||||||||||||||| ||| || ||||  ||||||||    
T  19784501 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaaga 19784595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 47685897 - 47686088
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||| ||||||||| ||||||| || ||| |||| |||||||  ||||||||||||||| ||||||| ||||||||||||||||||||| | ||     
T  47685897 gacatcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 47685996  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||| || |||||| |||||| ||||||| ||| || |||||||| |||||    
T  47685997 gatcggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaaga 47686088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 13270893 - 13271054
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  13270893 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 13270992  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 176  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  13270993 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 13271054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 23642593 - 23642754
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  23642593 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 23642692  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 176  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  23642693 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 23642754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 47418942 - 47418801
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || | |||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  47418942 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 47418843  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcatt 156  Q
    |||| |||||||||||||  ||||||||||| ||||||||||    
T  47418842 gatcggttacctacaaaacttaatttggcaactcgtggcatt 47418801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 11587200 - 11587331
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| ||||| ||||| |||| |  |||||||||||||| ||||||| || | ||||||||||| ||||| ||||||||||| ||||| |||    
T  11587200 gacatcacaggaacagcctcagttgcatccatctatggagttaatttggcataaatagatacctatcaaagtatctattcttgcttggcggcttctgagg 11587299  T
Q  115 gatcagttacctacaaaaaataatttggcaaa 146  Q
     |||  |||||||| ||| | |||||||||||    
T  11587300 aatcgtttacctacgaaagaaaatttggcaaa 11587331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 45472736 - 45472824
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 128  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||| |||||||||  | |||||||  ||||||||    
T  45472736 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 55725714 - 55725822
Alignment:
Q  41 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 140  Q
    ||||||||||||||||||||| ||||||||| |||||| | ||||| || |||||||||||||| ||  | |||||||  |||||||||||| | |||||    
T  55725714 atcaaaatatggagttaatttggcataaacaagttcctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaattt 55725813  T
Q  141 ggcaaatcg 149  Q
    |||| ||||    
T  55725814 ggcagatcg 55725822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 12697951 - 12697838
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||| | ||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||    
T  12697951 gacatcacaggaacaacctcatgttcatcaaaatatgaaattaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagg 12697852  T
Q  115 gatcagttacctac 128  Q
    ||||  ||||||||    
T  12697851 gatcgtttacctac 12697838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 8361213 - 8361146
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgact 107  Q
    |||||||||||||||||||||| |||||||||||||||  | ||||| |||||||||| |||||||||    
T  8361213 catcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgtttggcgact 8361146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 20002837 - 20002774
Alignment:
Q  41 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 104  Q
    ||||||||||||||||||||| |||||||||||||| | | ||||| |||||| ||||||||||    
T  20002837 atcaaaatatggagttaatttggcataaacaggttcttttaaaagtttctatcattgcttggcg 20002774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 171
Target Start/End: Complemental strand, 46145792 - 46145657
Alignment:
Q  36 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 135  Q
    ||||||||||||||||||||| |||| ||| ||| |||| ||| | ||||| |||||  ||||||||||  | || ||||| |  |||||||| ||| |     
T  46145792 gttacatcaaaatatggagttgatttggcacaaataggtgcctttgaaagtgtctatttttgcttggcgcttgctgagggaccgattacctactaaacaa 46145693  T
Q  136 aatttggcaaatcgtggcattttacctttggaggcg 171  Q
    |||||||||| ||||||  | ||| |||||||||||    
T  46145692 aatttggcaagtcgtggggtcttatctttggaggcg 46145657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 34332817 - 34333008
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||||| ||     
T  34332817 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcaacttctgaga 34332916  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||    
T  34332917 gatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaaga 34333008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 40930530 - 40930721
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||| || ||||| |||||||| ||||||||| |||  ||||||||||||||| ||||||| ||||||||||||||||||||| | |||    
T  40930530 gacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagg 40930629  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||  ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||| ||||| || |||||    
T  40930630 gattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtgtgtttctggttgtgggaacgtcgaaga 40930721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 19920231 - 19920422
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||| ||||||||||||| ||  ||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  19920231 gacatcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 19920330  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| |||||||||||||  |||||||| |||||| |||||| || || |||||| |||||| ||||||| ||| || |||||||| |||||    
T  19920331 gatcggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaaga 19920422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 2364415 - 2364254
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  2364415 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 2364316  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 176  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  2364315 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 2364254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 7312914 - 7312723
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||  | |||    
T  7312914 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctcaaagtatctatccttgcttggcgactaatgagg 7312815  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| |||||||||||||  |||||||||||||||||||||| |  || |||||| |||| | ||||||| ||| || |||| ||| |||||    
T  7312814 gatcggttacctacaaaacttaatttggcaaatcgtggcattctgtctgtggaggagcggctttgtgtttctggatgtgggattgtcgaaga 7312723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 10323573 - 10323714
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || | |||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  10323573 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 10323672  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcatt 156  Q
    |||| |||||||||||||  ||||||||||| ||||||||||    
T  10323673 gatcggttacctacaaaacttaatttggcaactcgtggcatt 10323714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 7032421 - 7032276
Alignment:
Q  50 tggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcg 149  Q
    |||||||  ||| ||| |||||||||||| ||||| | ||||||||||| ||||||||||| ||||||| ||||||||||||||| ||| |||| ||| |    
T  7032421 tggagttggtttggcacaaacaggttcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaattg 7032322  T
Q  150 tggcattttacctttggaggcgcggttgtgtgtttttggttgcggg 195  Q
    |||  ||||||||||||| ||||||| |||||| |  |||||||||    
T  7032321 tggtcttttacctttggatgcgcggtcgtgtgtctcaggttgcggg 7032276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 29523747 - 29523860
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||    
T  29523747 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagg 29523846  T
Q  115 gatcagttacctac 128  Q
    ||||  ||||||||    
T  29523847 gatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 26771011 - 26771158
Alignment:
Q  35 agttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaa 134  Q
    ||||||||| ||||||||||||||| | ||||||||||| |||| | ||||||||||| ||| ||||||| ||| | |||||||  |||||||| |||      
T  26771011 agttacatccaaatatggagttaatgtggcataaacaggctcctcttaaagtctctattcttacttggcggcttttgagggatcgtttacctacgaaagc 26771110  T
Q  135 taatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgt 182  Q
     ||||||||||| ||||| ||  | |||||||||| || |||||||||    
T  26771111 aaatttggcaaaccgtggtatcattcctttggaggtgcagttgtgtgt 26771158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 11203957 - 11203844
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| ||||| ||||||||||||||  | |||    
T  11203957 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatacttgcttggcgactgttgagg 11203858  T
Q  115 gatcagttacctac 128  Q
    ||||  ||||||||    
T  11203857 gatcgtttacctac 11203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 15312721 - 15312557
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||| ||||| ||  |||| |||||||||||| |||||||||||| |||||||||||| ||| | ||||||| |||  |||||||| |||| || |||    
T  15312721 gacatcgcaggaacatacccatttacatcaaaatttggagttaatttggcataaacaggtacctctaaaagtctatatatttgcttggtgactgctgagg 15312622  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtg 179  Q
     |||  || ||||  ||| | ||||||| ||||||||| ||| ||||  ||||||||||||||||    
T  15312621 aatcgtttgcctattaaagagaatttggaaaatcgtgggattataccaatggaggcgcggttgtg 15312557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 2755980 - 2755822
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||| ||||| || |||  ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || |||    
T  2755980 gacatcgcaggaacaacccatgttacatcaaaatatggagttgatttggcacaaacaggtacctttgaaagtgtctatatttgcttggcgtttgctgagg 2755881  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcg 173  Q
    || | ||||||||| ||| | |||||||||| ||||||  | ||| |||||||||||||    
T  2755880 gaccggttacctactaaataaaatttggcaagtcgtggggtcttatctttggaggcgcg 2755822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 12342228 - 12342340
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| ||||||||||||| || | ||||| ||||||||||||||||||||  | |||    
T  12342228 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggtt-ctttaaaagtttctatccttgcttggcgactgttgagg 12342326  T
Q  115 gatcagttacctac 128  Q
    ||||  ||||||||    
T  12342327 gatcgtttacctac 12342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 17097894 - 17098043
Alignment:
Q  31 ccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaa 130  Q
    ||||| |||||||||||| |||||||||||| |||||||||||    | | |||||||||||| |||||| ||||||  | | ||||| ||||||||| |    
T  17097894 ccccatttacatcaaaatgtggagttaatttggcataaacaggcatatgtgaaagtctctatctttgcttagcgactgttgatggatcggttacctacta 17097993  T
Q  131 aaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgt 180  Q
    || | ||||||||||| ||||| ||| |  || ||||||| |||||||||    
T  17097994 aagaaaatttggcaaaccgtgggattatttctatggaggcacggttgtgt 17098043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 33496685 - 33496572
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||| ||||||||||||||| |||||||||||||||| | ||||| |||||| |||||||||||||  | |||    
T  33496685 gacatcacaggaacaacctcatgttcatcaatatatggagttaatttggcataaacaggttcctttaaaagtttctatcattgcttggcgactgttgagg 33496586  T
Q  115 gatcagttacctac 128  Q
    ||||  ||||||||    
T  33496585 gatcgtttacctac 33496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 35214398 - 35214462
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 104  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| |||||||||| ||||||    
T  35214398 catcaaaatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgtttggcg 35214462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 963186 - 963325
Alignment:
Q  36 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 135  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || ||||| | ||||||||| ||| |     
T  963186 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 963285  T
Q  136 aatttggcaaatcgtggcattttacctttggaggcgcggt 175  Q
    |||||||||| | ||||  | ||| ||||||||| |||||    
T  963286 aatttggcaagttgtggggtcttatctttggaggagcggt 963325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 36801106 - 36801190
Alignment:
Q  44 aaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 128  Q
    |||||||||||||||||| ||||||| |||||||  | ||||| | |||||||||||||| ||| || |||||||  ||||||||    
T  36801106 aaaatatggagttaatttagcataaataggttcccttaaaagtttatatccttgcttggcaactgctgagggatcgtttacctac 36801190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 7031055 - 7031146
Alignment:
Q  51 ggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttgg 142  Q
    ||||||||||| |||||||||||||||| | ||| | ||||||||||||||||| ||  | |||||||  |||||||| |||  ||||||||    
T  7031055 ggagttaatttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 7031146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 19890791 - 19890733
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgc 98  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| || ||||||||    
T  19890791 catcaaaatatggagttaatctggcataaacaggttcctttaaaagtttccatccttgc 19890733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 3140969 - 3140836
Alignment:
Q  36 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 135  Q
    ||||||||||||||||||||| |||| | | |||||||| ||| | ||||| |||||  |||||||||   | || ||||| | ||||||||| ||| |     
T  3140969 gttacatcaaaatatggagttgatttggtacaaacaggtgcctttgaaagtgtctatatttgcttggcatttactgagggaccggttacctactaaacaa 3140870  T
Q  136 aatttggcaaatcgtggcattttacctttggagg 169  Q
    |||||||||| ||||||  | ||| |||||||||    
T  3140869 aatttggcaagtcgtggggtcttatctttggagg 3140836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 16179073 - 16178952
Alignment:
Q  28 cagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttaccta 127  Q
    |||||||| |||| ||||||| | |||||||||| |||||||||||| ||| | ||||| |||||  |||| ||||| ||  | | |||||   ||||||    
T  16179073 cagccccatttacgtcaaaatttagagttaatttggcataaacaggtacctcttaaagtatctatttttgcgtggcgcctgatgaaggatcgtctaccta 16178974  T
Q  128 caaaaaataatttggcaaatcg 149  Q
    | ||| | ||||||||||||||    
T  16178973 ctaaagagaatttggcaaatcg 16178952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 2e-66; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 13396526 - 13396335
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||| || ||     
T  13396526 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtatctatccttgcttggcgactcctgaga 13396427  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||    
T  13396426 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaaga 13396335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 41665371 - 41665562
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| | || ||     
T  41665371 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgattcctaaga 41665470  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| ||| || ||||| ||||||||    
T  41665471 gatcagttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaaga 41665562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 9922739 - 9922548
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||||||||| || |||||||||||  |||||||||||| ||||| |||||||||| ||||||| ||||||||||| || |||||||| |||    
T  9922739 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatgacgacttctgagg 9922640  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |||||| |||||||| |||||    
T  9922639 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttgtgggaatgtagaaga 9922548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 32266698 - 32266511
Alignment:
Q  19 tcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatc 118  Q
    ||||| ||||| || |||||||| || ||| |||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||| | || ||||    
T  32266698 tcacaagagcaaccacagttacaccataatttggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatc 32266599  T
Q  119 agttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
     ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||    
T  32266598 ggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaaga 32266511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 7924524 - 7924363
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  7924524 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 7924425  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 176  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  7924424 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 7924363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 8299941 - 8299773
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||| ||||||| ||||| || ||| |||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  8299941 gacatcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 8299842  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtt 183  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||| || ||||||    
T  8299841 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgattatgtgtt 8299773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 172241 - 172050
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||  ||||||||| || || ||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  172241 gacatcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 172142  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    || | |||||| ||||||  |||||||| ||| |||| |||| || || |||||| |||||| ||||||| ||| || || ||||| |||||    
T  172141 gaccggttacccacaaaacttaatttggtaaaccgtgacattctatctatggaggagcggttatgtgtttctggctgtggtaatgtcgaaga 172050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 20824434 - 20824307
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||    
T  20824434 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagg 20824335  T
Q  115 gatcagttacctacaaaaaataatttgg 142  Q
    ||||  |||||||| |||  ||||||||    
T  20824334 gatcgcttacctactaaatctaatttgg 20824307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 17699595 - 17699507
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 128  Q
    |||||||||||||||||||||| |||||||||||||||  | ||||| |||||||||||||||||||| || |||||||  ||||||||    
T  17699595 catcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 17699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 13200261 - 13200070
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||||||||| ||| |||||||||||||||| | ||||| || |||||||||||||  ||  | |||    
T  13200261 gacatcacaggaacaacctcatgttcatcaaaatatggagttagtttggcataaacaggttcctctaaaagtttcaatccttgcttggcagctattgagg 13200162  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    ||||  |||||||||||| | ||||||||| | ||  | ||| ||||| ||||||| ||||| ||||||  ||| || ||| ||||||||||    
T  13200161 gatcgtttacctacaaaatacaatttggcagagcgcagaattctacctatggaggctcggttttgtgttactgggtgtgggcatgttgaaga 13200070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 37434270 - 37434157
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| ||||||||| |||||| | ||||||||||| ||||||||||||||  | |||    
T  37434270 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacatgttcctttaaaagtctctattcttgcttggcgactgttgagg 37434171  T
Q  115 gatcagttacctac 128  Q
    ||||  ||||||||    
T  37434170 gatcgtttacctac 37434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 2170480 - 2170389
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgac 106  Q
    |||||||||||| || || ||  | |||||||||||||||||||| | |||||||||||||||| | ||||| |||||||||||||||||||    
T  2170480 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgcttggcgac 2170389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 5181778 - 5181643
Alignment:
Q  45 aaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggca 144  Q
    |||||||||| |||||| |||||||||||| ||| | ||||||| ||| |||| |||||| |  || |||||||| ||||| |||||| ||||||||  |    
T  5181778 aaatatggagataatttggcataaacaggtgcctctaaaagtctatattcttgtttggcggcggctgagggatcatttaccaacaaaagataatttgata 5181679  T
Q  145 aatcgtggcattttacctttggaggcgcggttgtgt 180  Q
    || ||| |  |  | |||||||||||||||||||||    
T  5181678 aaccgtcgagtcattcctttggaggcgcggttgtgt 5181643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 43270563 - 43270496
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgact 107  Q
    ||||||||||||||||| || | |||||||||||||||| | ||||| ||||||||| ||||||||||    
T  43270563 catcaaaatatggagttcatctggcataaacaggttcctttaaaagtttctatccttacttggcgact 43270496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 34137013 - 34137131
Alignment:
Q  63 gcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcgtggcattttacct 162  Q
    |||||||||||| ||| ||||||||||||| ||||||||||| ||| | | |||||  |||||||| ||| | ||||||||||| || || ||  | |||    
T  34137013 gcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctacgaaagaaaatttggcaaaccgcggtatcattcct 34137112  T
Q  163 ttggaggcgcggttgtgtg 181  Q
     |||||| |||||||||||    
T  34137113 gtggaggggcggttgtgtg 34137131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 2529963 - 2529856
Alignment:
Q  76 cctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggt 175  Q
    |||| |||||| || |||||||||||||| ||  | |||||||  |||||||||||| | ||||||| | ||||||| ||| ||| ||||||||| ||||    
T  2529963 cctaccaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggtagatcgtggaattctacttttggaggctcggt 2529864  T
Q  176 tgtgtgtt 183  Q
    | ||||||    
T  2529863 tttgtgtt 2529856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 13879610 - 13879644
Alignment:
Q  136 aatttggcaaatcgtggcattttacctttggaggc 170  Q
    |||||||||||||||||||||||||| ||||||||    
T  13879610 aatttggcaaatcgtggcattttaccgttggaggc 13879644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 41207154 - 41206987
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||| ||||| || || |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |||    
T  41207154 gacatcgcaggaacatcctcagttacatccaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcggcttctgagg 41207055  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgt 182  Q
    |||| ||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||    
T  41207054 gatcggttacctacaaaaaataatttggcaaatcgtggcattattcccttggaggcgcggttgtgtgt 41206987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 4552307 - 4552138
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||| |||||||| | ||||| ||||||||||||||||||||||| |||    
T  4552307 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctcttaaagtatctatccttgcttggcgacttctgagg 4552208  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgttt 184  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||||| |||||||    
T  4552207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgttt 4552138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 206
Target Start/End: Complemental strand, 15917767 - 15917601
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatt 139  Q
    ||||||||||| |||||||||| ||||||| |||||||| | ||||||| ||||||||||||| |||| || |||||||  ||||||||||||  |||||    
T  15917767 catcaaaatattgagttaatttcgcataaataggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatt 15917668  T
Q  140 tggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    ||||||||||||| ||| | |||||||| | ||||||||||||   |||||| ||| ||||||||||    
T  15917667 tggcaaatcgtggtattattcctttggaagtgcggttgtgtgtcactggttgtgggcatgttgaaga 15917601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 45 - 182
Target Start/End: Original strand, 17764994 - 17765131
Alignment:
Q  45 aaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggca 144  Q
    ||||||||||||||| | ||||||||||| |||| | ||||||||||| ||||||||||| ||  | |||||||| |||||||| |||   |||||||||    
T  17764994 aaatatggagttaatatggcataaacaggctcctcttaaagtctctattcttgcttggcggctattgagggatcatttacctacgaaagcaaatttggca 17765093  T
Q  145 aatcgtggcattttacctttggaggcgcggttgtgtgt 182  Q
    || ||||| ||  | |||||||||||||||||||||||    
T  17765094 aaccgtggtatcattcctttggaggcgcggttgtgtgt 17765131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 12645648 - 12645506
Alignment:
Q  41 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 140  Q
    ||||||||||||||||||||| ||||||||||||| || | ||||| || |||||||||||||| ||  | |||||||  |||||||||||| | |||||    
T  12645648 atcaaaatatggagttaatttggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaattt 12645549  T
Q  141 ggcaaatcgtggcattttacctttggaggcgcggttgtgtgtt 183  Q
    | || ||||  | ||| ||||||||||||| ||||| ||||||    
T  12645548 gacagatcgcagaattctacctttggaggctcggttttgtgtt 12645506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 28252858 - 28252689
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| ||||| |||||||||  |  |||||| ||||||| |||||||||||| ||| | ||||| ||||| ||||||||||| ||| | |||    
T  28252858 gacatcacaggaacagcctcagttacattcatctatggaattaatttggcataaacaggtacctctaaaagtatctattcttgcttggcggcttttgagg 28252759  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgttt 184  Q
    ||||  |||||||| ||    ||||||||||| | ||||||| | | | |||||| |||||| |||||||    
T  28252758 gatcgcttacctacgaagggaaatttggcaaaccatggcattattcatatggaggggcggttatgtgttt 28252689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 10999978 - 11000040
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgg 102  Q
    |||||||||||||||||||| |  |||||||||||| || | ||||| |||||||||||||||    
T  10999978 catcaaaatatggagttaatctgccataaacaggtttctttaaaagtttctatccttgcttgg 11000040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 14439865 - 14439777
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 128  Q
    ||||||| |||||||||||| | |||||||||||||||| | ||||| |||||| | ||||| |||||  | |||||||  ||||||||    
T  14439865 catcaaactatggagttaatctggcataaacaggttcctttaaaagtttctatcttggcttgacgactgttgagggatcgtttacctac 14439777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 38604376 - 38604464
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggc 103  Q
    |||||||||||| || ||  | || |||||||||||||||||||| | ||||||||| || ||| | ||||| || |||||||| ||||    
T  38604376 gacatcacaggaacaacctaattttcatcaaaatatggagttaatctggcataaacaagtacctctaaaagtttcaatccttgcatggc 38604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 51052618 - 51052427
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  51052618 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 51052519  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||||| ||||||| ||| || |||| ||| |||||    
T  51052518 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaaga 51052427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 11909107 - 11909298
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||| |||    
T  11909107 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcattgcttggcgacttctgagg 11909206  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||| | ||||||| ||| || |||| ||| |||||    
T  11909207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggctatgtgtttctggatgtgggattgtcgaaga 11909298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 35541187 - 35541033
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  35541187 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 35541088  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggagg 169  Q
    |||| |||||| |||||| ||||||||||||||||||||||| || || ||||||    
T  35541087 gatcggttacccacaaaacataatttggcaaatcgtggcattctatctgtggagg 35541033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 6050741 - 6050580
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  6050741 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 6050642  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 176  Q
    |||| |||||||||||||  ||||||||||||| |||||||| || || |||||| ||||||    
T  6050641 gatcggttacctacaaaacttaatttggcaaattgtggcattctatctgtggaggagcggtt 6050580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 16917836 - 16917938
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatt 139  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||  |||||||| |||  |||||    
T  16917836 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatt 16917935  T
Q  140 tgg 142  Q
    |||    
T  16917936 tgg 16917938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 43388480 - 43388415
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcga 105  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||    
T  43388480 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcga 43388415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 47623079 - 47623244
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||| || || |||||||||  | ||||||| ||||||| |||||||||||| ||| ||||||| ||||| ||||||||||| ||| | |||    
T  47623079 gacatcacaggaacaacctcagttacattcatatatggaattaatttggcataaacaggtacctctcaaagtatctattcttgcttggcggcttttgagg 47623178  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgt 180  Q
    || |  |||||||| ||    ||||||||||| |||| |||| | ||| |||||| ||||||||||    
T  47623179 gaccgcttacctacgaagggaaatttggcaaaccgtgacattattcctatggaggggcggttgtgt 47623244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 28351852 - 28351776
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctcta 91  Q
    |||||||| |||| | ||||| | ||||||||||||||||||||||| |||||||| ||| ||| | ||||||||||    
T  28351852 gacatcactggagtatccccattcacatcaaaatatggagttaatttggcataaaccggtccctctgaaagtctcta 28351776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 37191237 - 37191301
Alignment:
Q  40 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 104  Q
    |||||||||||||||||||| | |||||||| ||||| | | ||||| | |||||||||||||||    
T  37191237 catcaaaatatggagttaatctggcataaactggttcatttaaaagtttatatccttgcttggcg 37191301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 3390 - 3199
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||| ||||| | ||     
T  3390 gacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagtttctatccttgcttggagacttttgaga 3291  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaaga 206  Q
    |||| ||||||||| ||||  ||||||||||| | ||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||    
T  3290 gatcggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaaga 3199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 11207 - 11392
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    |||||||||||||||| ||||| |||| || ||| |||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  11207 gacatcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctcagg 11306  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgt 200  Q
    |||| |||||||||||||  |||||||||||| ||||||||| || || |||||| |||||| ||||||| ||| || ||||||||    
T  11307 gatcggttacctacaaaacttaatttggcaaaccgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgt 11392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 105845 - 106006
Alignment:
Q  15 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 114  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  105845 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 105944  T
Q  115 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 176  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  105945 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 106006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University