View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_379 (Length: 205)
Name: NF10233A_low_379
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_379 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 5e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 43232630 - 43232775
Alignment:
| Q |
42 |
ttaattttatttagaatactatttttatgtcatcgtggacttaatctagttaataagaatacaattgcacaatatatataggagtcggggtttaattctc |
141 |
Q |
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| T |
43232630 |
ttaattttatttaaaatactatttttatgtcatcgtgggcttaatctagttaataagaataca-ttgcacaatatatataggagtcggggtttaaatctc |
43232728 |
T |
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| Q |
142 |
agacaacctacttctatgcacatttaaaatatatgaactctaacacc |
188 |
Q |
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| T |
43232729 |
agacaacccacttctatgcacatttaaaatatgtgaactctaacacc |
43232775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 43232577 - 43232614
Alignment:
| Q |
12 |
gacatcacaaattataaatcatgaaacaaattaatttt |
49 |
Q |
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| T |
43232577 |
gacatcacaaattataaatcatgaaacaaattaatttt |
43232614 |
T |
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