View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_38 (Length: 393)
Name: NF10233A_low_38
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 4 - 387
Target Start/End: Original strand, 7733620 - 7734004
Alignment:
| Q |
4 |
atgaaacatcatgtacaacacctcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaacagacc |
103 |
Q |
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| T |
7733620 |
atgaaacatcatgtacaacgcttcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaacagacc |
7733719 |
T |
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| Q |
104 |
ttcactaacttccagacgaattcttaccaacgcctagaaaggcatcattcattacaaaagcaatgtacaccatttctattatttcaatacctcacactct |
203 |
Q |
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| T |
7733720 |
ttcactaacttccagacgacttcttaccaatgcctagaaaggcctcattcattacaaaagcaatgtacaccatttctattatttcaatgcctcacactct |
7733819 |
T |
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| Q |
204 |
ttgttttcatattgacttgagtatccatcttagttttattttggagaggatataatttagtttttggttattaactttgtgtttataaaatattataa-n |
302 |
Q |
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| T |
7733820 |
ttgttttcatattgacttgagtatccatcttagttttattttggagcggatgtaatttagtttttggttattaactttgtgtttataacatattataatt |
7733919 |
T |
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| Q |
303 |
nnnnnnaaacaatacaagcggaaagacggacacctgagtatctatctttccgctctttttattgcgtcaatgcgtataaattttc |
387 |
Q |
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| T |
7733920 |
ttttttaaacaatacaagcggaaagacggacacctgaatatccatctttctgctctttttattgcgtcaatgcgtataaattttc |
7734004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 48458269 - 48458236
Alignment:
| Q |
351 |
tccgctctttttattgcgtcaatgcgtataaatt |
384 |
Q |
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| T |
48458269 |
tccgctctttttattgcgttaatgcgtataaatt |
48458236 |
T |
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