View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_386 (Length: 202)

Name: NF10233A_low_386
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_386
NF10233A_low_386
[»] chr4 (16 HSPs)
chr4 (12-186)||(27514410-27514584)
chr4 (15-186)||(27468777-27468957)
chr4 (12-186)||(27524041-27524223)
chr4 (12-186)||(27503442-27503622)
chr4 (15-185)||(27476011-27476187)
chr4 (109-186)||(27508488-27508565)
chr4 (12-109)||(27489628-27489723)
chr4 (12-71)||(27556962-27557021)
chr4 (12-73)||(27508425-27508486)
chr4 (12-74)||(27506263-27506325)
chr4 (12-74)||(27479399-27479461)
chr4 (9-74)||(27486459-27486524)
chr4 (112-176)||(27517369-27517433)
chr4 (14-64)||(27497858-27497908)
chr4 (19-76)||(27526689-27526747)
chr4 (12-72)||(27431878-27431937)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 27514410 - 27514584
Alignment:
Q  12 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatcaacaaatatgaggttgcaca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||    
T  27514410 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctg-aca 27514508  T
Q  112 tctcatttggtagcaagtggaagctttgtattggaca-ttgtttaagaaggtagggtacactcttagacaacacca 186  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27514509 tctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacacca 27514584  T

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Target: chr4; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 27468957 - 27468777
Alignment:
Q  15 acatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatcaacaaatatgaggttgcac---- 110  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||        
T  27468957 acatcggcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctgcacttga 27468858  T
Q  111 ----atctcatttggtagcaagtggaagctttgtattggaca-ttgtttaagaaggtagggtacactcttagacaacacca 186  Q
        |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27468857 gcacatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacacca 27468777  T

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Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 27524041 - 27524223
Alignment:
Q  12 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatcaacaaatatgaggttgcac- 110  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| | |||||||||||||| || |||||||| |||||||     
T  27524041 tggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaaggaaaccaattaaatcatgaagaaatatgacgttgcact 27524140  T
Q  111 -------atctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacacca 186  Q
           ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  27524141 tgagcacatctcatttggtagcaattggaagctttgtattggatattgtttaagaaggtagggtacactctaagacaacacca 27524223  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 27503442 - 27503622
Alignment:
Q  12 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatcaacaaatatgagg------t 105  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||  |   | | ||||||||||| |||||||||||||      |    
T  27503442 tggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattattga---cgctaattaaatcatgaacaaatatgaggctatact 27503538  T
Q  106 tg--cacatctcatttggtagcaagtggaagctttgtattggacattgtttaag-aaggtagggtacactcttagacaacacca 186  Q
    ||  ||||||| ||||  |||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||    
T  27503539 tgatcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtaggggacactctaagacaacacca 27503622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 27476187 - 27476011
Alignment:
Q  15 acatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatcaacaaatatgagg------ttg- 107  Q
    ||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||  |   | | ||||||||||| |||||||||||||      |||     
T  27476187 acatcggcattatcataatgaagaaaacatgtctgaagcatgcttacaaaattattga---cgctaattaaatcatgaacaaatatgaggctatacttga 27476091  T
Q  108 -cacatctcatttggtagcaagtggaagctttgtattggacattgtttaag-aaggtagggtacactcttagacaacacc 185  Q
     ||||||| ||||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  27476090 tcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtagggtacactctaagacaacacc 27476011  T

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Target: chr4; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 27508488 - 27508565
Alignment:
Q  109 acatctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacacca 186  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  27508488 acatctcatttggtaggaagtggaagctttgtattggacattgtttaagaaggtagggtacactctaagacagcacca 27508565  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 27489628 - 27489723
Alignment:
Q  12 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatcaacaaatatgaggttgca 109  Q
    ||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||  ||||  |||||||||  ||| || |||||||||||||||    
T  27489628 tggacatcgacattttcataatgaagaaaacatgtctaaagcatgtttacaaaattacaaagt--accaattaatgcatgaataaatatgaggttgca 27489723  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 27557021 - 27556962
Alignment:
Q  12 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatga 71  Q
    |||| |||| || |||||||||| ||||||||||||||||||||||||||||||||||||    
T  27557021 tggaaatcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 27556962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 27508425 - 27508486
Alignment:
Q  12 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaag 73  Q
    |||||||||||||| |||||||| |||||||||||||  |||||||||| ||||||||||||    
T  27508425 tggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttataaaattatgaag 27508486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 27506263 - 27506325
Alignment:
Q  12 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagt 74  Q
    |||||||||||| | | |||||| ||||||||||||| || ||||||||||||||||||||||    
T  27506263 tggacatcagcactttgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagt 27506325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 27479461 - 27479399
Alignment:
Q  12 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagt 74  Q
    ||||||||||||  || |||||| ||||||||||||| || |||||||||| |||||||||||    
T  27479461 tggacatcagcaccatgataatgaagaaaacatgtctgaaacatgtttacacaattatgaagt 27479399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 27486524 - 27486459
Alignment:
Q  9 agatggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagt 74  Q
    |||||||||||| || | | |||||| ||||||||||||| || |||||||||| |||||||||||    
T  27486524 agatggacatcaacactttaataatgaagaaaacatgtctgaaacatgtttacacaattatgaagt 27486459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 27517369 - 27517433
Alignment:
Q  112 tctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactctta 176  Q
    ||||| |||||  |||||||||||||||| |||| |||||||| ||||||| ||||||| |||||    
T  27517369 tctcaattggttccaagtggaagctttgtgttggccattgtttgagaaggtggggtacaatctta 27517433  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 27497908 - 27497858
Alignment:
Q  14 gacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaa 64  Q
    ||||||| ||||||||||||| ||||||||||||  |||| ||||||||||    
T  27497908 gacatcaacattatcataatgaagaaaacatgtcctaagcctgtttacaaa 27497858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 27526689 - 27526747
Alignment:
Q  19 cagcattatcataatgcagaaaa-catgtctaaagcatgtttacaaaattatgaagtac 76  Q
    |||||||||||||||| |||||| ||||||| ||  |||||| ||||||||||||||||    
T  27526689 cagcattatcataatgaagaaaaacatgtctgaacaatgttttcaaaattatgaagtac 27526747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 27431878 - 27431937
Alignment:
Q  12 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaa 72  Q
    ||||||||| ||||||||  ||| ||||| ||||| ||| |||||||||||||||||||||    
T  27431878 tggacatcaacattatcaagatgaagaaa-catgtataatgcatgtttacaaaattatgaa 27431937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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