View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_389 (Length: 201)
Name: NF10233A_low_389
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_389 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 9e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 1875284 - 1875119
Alignment:
| Q |
15 |
gacatcaggtggtttcgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcnnnnnnntccaat |
114 |
Q |
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| T |
1875284 |
gacatcaggtggttccgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcaaaaaaatccaat |
1875185 |
T |
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| Q |
115 |
ggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcaccattttcttc |
180 |
Q |
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| T |
1875184 |
ggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcaccatattcttc |
1875119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 1885515 - 1885376
Alignment:
| Q |
40 |
cgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcnnnnnnntccaatggtaaggcgctatgtagtggaaatt |
139 |
Q |
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| T |
1885515 |
cgataatcactaatgttaaacgtcacgaaaggattgtcatttagagaaccttgatcattat-aaaaatatccaattgtaaggcactctgtagtggaaatt |
1885417 |
T |
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| Q |
140 |
gaaagagaaggtatagctgtttggccatcaccattttcttc |
180 |
Q |
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| T |
1885416 |
gaaagagaaggtatggctgtttggctatcaccatattcttc |
1885376 |
T |
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