View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_39 (Length: 385)
Name: NF10233A_low_39
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_39 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 21706478 - 21706108
Alignment:
| Q |
15 |
atggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagac |
114 |
Q |
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| T |
21706478 |
atggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacgtaaaacttgtaaatgcttgagacattggagac |
21706379 |
T |
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| Q |
115 |
tctgagtctttcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataaatccaagtacagttttaggggcaagttctgaaa |
214 |
Q |
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| T |
21706378 |
tctgagtctgtcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataattccaagtccagttttaggggcaagttctgaaa |
21706279 |
T |
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| Q |
215 |
atgaaaaaggttgatgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacatacttcattttgactatgatcagagcgt |
314 |
Q |
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| T |
21706278 |
atgaaaaaggttgatgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacatacttcattttgactatgatcagagcgt |
21706179 |
T |
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| Q |
315 |
atcatcacaaagatccatgacaaagccaatttgggacaatccttcacaacaagagcctttaaagagtgaga |
385 |
Q |
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| T |
21706178 |
atcatcacaaagatccatgacaaagccaatttgggacaatcgttcacaacaagagcctttaaagagtgaga |
21706108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 21712986 - 21713191
Alignment:
| Q |
15 |
atggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagac |
114 |
Q |
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| T |
21712986 |
atggacatcaactctggtagacttctagattccttcatggagaacaaagatttcaaattttcacaatcacctacttttaaatactggagacattggagac |
21713085 |
T |
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| Q |
115 |
tctgagtctttcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataaatccaagtacagttttaggggcaagttctgaaa |
214 |
Q |
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| T |
21713086 |
tccatatctgtcttggagctgtaggatcctgccatgatatggatttcaactgaggcaaaacatgtaaatacaactccagttttaagggcaagttctgaac |
21713185 |
T |
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| Q |
215 |
atgaaa |
220 |
Q |
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| T |
21713186 |
atgaaa |
21713191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 21709388 - 21709236
Alignment:
| Q |
17 |
ggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagactc |
116 |
Q |
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| T |
21709388 |
ggacatcaactttagtagacttctagattccttcacggagaatagagatttcagattttcacaatcaccaacatttcaacgctggagacattggagactc |
21709289 |
T |
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| Q |
117 |
tgagtctttcttggagttgtaggacccaaccatgatatggagttcaactgagg |
169 |
Q |
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| T |
21709288 |
cgaatttgtcttggagttataagacccaaccatgatatggcgttcaattgagg |
21709236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 21709144 - 21709088
Alignment:
| Q |
296 |
ttgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggaca |
352 |
Q |
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| T |
21709144 |
ttgactatgatcagagcgtatcatcacagcgatccataacatagccaactttggaca |
21709088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 21713334 - 21713422
Alignment:
| Q |
297 |
tgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggacaatccttcacaacaagagcctttaaagagtgaga |
385 |
Q |
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| T |
21713334 |
tgactatgaccagaacgaatcataagagcgatccacgacatatccaatttgggacaatcctccacaacaagatccctcaaagagtgaga |
21713422 |
T |
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