View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_40 (Length: 385)
Name: NF10233A_low_40
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 36935856 - 36936246
Alignment:
| Q |
1 |
aatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccattttatgatgttttttgggcac |
100 |
Q |
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| T |
36935856 |
aatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccattttatgatgttttttgggcac |
36935955 |
T |
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| Q |
101 |
aaatataccacatcccttcctatgtataaataatggcgaagttattcataaatatagacaactcctattcatggtgtttaa--------tcttgctcggt |
192 |
Q |
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| T |
36935956 |
aaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagactactcctattcatggtgtttaatcttgcattcttgctcggt |
36936055 |
T |
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| Q |
193 |
tatgaattattttctttggtttttgtatgctcagattgactacaggaagtctcgaaagtgaccattagatggttgtagaagagatcgaggctggagacat |
292 |
Q |
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| T |
36936056 |
tatgaatta-tttctttggtttttgtatgctcagattgactacaggtagtctcgaaagtgaccattagatggttttagaagagatcgaggttggagacat |
36936154 |
T |
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| Q |
293 |
ctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacacatttagggtttttcgacaaattgaatgcaataacaccaaactcga |
384 |
Q |
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| T |
36936155 |
ctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacatatttagggtttttcgacaaattgaacacaataacaacaaactcga |
36936246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 36956993 - 36957044
Alignment:
| Q |
284 |
tggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaa |
336 |
Q |
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| T |
36956993 |
tggagacatctcgcattagcaatatcctcagg-tgcaatttcagaaggtcaaa |
36957044 |
T |
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