View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_41 (Length: 382)
Name: NF10233A_low_41
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_41 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 34900536 - 34900902
Alignment:
| Q |
17 |
atcaaagggatgtaaactccttaattgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaagggg |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34900536 |
atcaaagagatgtaaactccttaattgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggga |
34900635 |
T |
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| Q |
117 |
aagacagctcttaggagaaaagagctatcgatgaaatggaactagttttcgcctcactggttatgattatattgttaaattgagttttttctacacttta |
216 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
34900636 |
aagacagctcttagaagaaaagagctatcaatgaaatggaactagttctcgcctcactcgttatgattatattactaaattgagttttttctacacttta |
34900735 |
T |
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| Q |
217 |
ttttaaaaaagttatttttgattccacctccttacaacgttggaatttcttttgaaatatttttatttaattgacaacttttacaaactttataagtttt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34900736 |
ttttaaaaaagttatttttgattccacctccttacaacgttcgaatttcttttgaaatatttttatttaattgacaacttttacaaactttataagtttt |
34900835 |
T |
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| Q |
317 |
caaatatacaac-gattgtgaattaaataaatgtttgtgcctttgtgtggttctcttctagctaatg |
382 |
Q |
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| T |
34900836 |
caaatatacaactgattgtgaattaaataaatgtttgtgcctttgtgtggttctcttctagctaatg |
34900902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 26894737 - 26894639
Alignment:
| Q |
65 |
ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt |
163 |
Q |
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| T |
26894737 |
ttttgagtcgagagaaaagagttatctgttagatgaagctaccactaagagaaaggccactcttagcaggaaagagctatcaacgagatggagctagtt |
26894639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 26900176 - 26900078
Alignment:
| Q |
65 |
ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt |
163 |
Q |
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| T |
26900176 |
ttttgagtcgagagaaaagagttatctgttagatgaagctaccactaagagaaaggccactcttagcaggaaagagctatcaacgagatggagctagtt |
26900078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 4405789 - 4405887
Alignment:
| Q |
65 |
ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt |
163 |
Q |
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| T |
4405789 |
ttttgagtcgagagaaaagagctatccgttagatgaagctaccactaagggaaaggccactcttagtaggaaagagctatcaacgagatggagctagtt |
4405887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 20024008 - 20023954
Alignment:
| Q |
227 |
gttatttttgattccacctccttacaacgttggaatttcttttgaaatattttta |
281 |
Q |
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| T |
20024008 |
gttatttctgattccatctctttacaacgtttgattttcttttgaaatattttta |
20023954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 183286 - 183182
Alignment:
| Q |
40 |
attgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaaga |
139 |
Q |
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| T |
183286 |
attgaaaaatattttacgtttttgtttt-gagtcgagagaaaagagttatttgttaggtggagctaccactaaaggaaaggtcactcttaggagaaaaga |
183188 |
T |
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| Q |
140 |
gctatc |
145 |
Q |
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| T |
183187 |
gctatc |
183182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 9814699 - 9814797
Alignment:
| Q |
65 |
ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt |
163 |
Q |
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| T |
9814699 |
ttttgagtcgagagaaaagagctatccgttagatgaagctaccactaagagaaaggccactcttagtaggaaagagctatcaacgagatggagctagtt |
9814797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 29467405 - 29467354
Alignment:
| Q |
64 |
tttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggg |
115 |
Q |
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| T |
29467405 |
tttttgagtcgagagaaaagagatatctgttagatgaatctaccactaaggg |
29467354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 30944960 - 30945022
Alignment:
| Q |
59 |
ttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagac |
121 |
Q |
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|||| ||||| | |||||||||||||| ||| ||||||||| ||| ||||||||||| ||||| |
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| T |
30944960 |
tttttttttttagtcgagagaaaagagctatctgttagatggagctaccactaagggaaagac |
30945022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 30943933 - 30943989
Alignment:
| Q |
65 |
ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagac |
121 |
Q |
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| T |
30943933 |
ttttgagtcgagagaaaagagctatccgttagatggagctaccactaagggaaagac |
30943989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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