View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_42 (Length: 381)
Name: NF10233A_low_42
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 32472721 - 32473071
Alignment:
| Q |
14 |
aaggagaggtttatgttgttttgaagggaataaggataaagcttggagaacaagatcacgtgcggcgatatctacgaaaacgagtttggattcgcagtgg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32472721 |
aaggagaggtttatgttgttttgaagggaataaggataaagcttggagaacaagatcacgtgcggcgatatccacgaaaacgagtttggattcgcagtgg |
32472820 |
T |
|
| Q |
114 |
aggaggatgttggagatgatacgcgcgtcaaggcgcgtgttgatgttgttaaggatagctccggtgaagggaacggcgaagtggagttcatacatggcgg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32472821 |
aggaggatgttggagatgatacgcgcgtcaaggcgcgtgttgatgttgttaaggatagctccggtgaaggggacggcgaagtggagttcatacatggcgg |
32472920 |
T |
|
| Q |
214 |
ggatgttgggagcgatgacggagacgacgttgccgcggcggatacctaaggaggtgatggcggaggcaagttggaggcatcgtttgtgggtttgagacca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32472921 |
ggatgttgggagcgatgacggagacgacgttgccgcggcggatacctaaggaggtgatggcggaggcaagttggaggcatcgtttgtgggtttgagacca |
32473020 |
T |
|
| Q |
314 |
tgtgaaaacggtgtcgttgtagatgatggaaggtgtgttggggtagattgt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32473021 |
tgtgaaaacggtgtcgttgtagatgatggaaggtgtgttggggtagattgt |
32473071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University