View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_43 (Length: 379)
Name: NF10233A_low_43
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_43 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0079 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Original strand, 183171 - 183539
Alignment:
| Q |
10 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcgcgcccctagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
183171 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcgcgcccctagg |
183270 |
T |
|
| Q |
110 |
tattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
183271 |
tattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagc |
183370 |
T |
|
| Q |
210 |
gccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataacc |
309 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183371 |
gccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataacc |
183470 |
T |
|
| Q |
310 |
atctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
183471 |
atctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctg |
183539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 494345 - 493977
Alignment:
| Q |
10 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcgcgcccctagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
494345 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcgcgcccctagg |
494246 |
T |
|
| Q |
110 |
tattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494245 |
tattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagc |
494146 |
T |
|
| Q |
210 |
gccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataacc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
494145 |
gccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataacc |
494046 |
T |
|
| Q |
310 |
atctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494045 |
atctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctg |
493977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 18192007 - 18191638
Alignment:
| Q |
10 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcgcgcccctagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18192007 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcgcgcccctagg |
18191908 |
T |
|
| Q |
110 |
tattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagc |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18191907 |
tattctgtacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagc |
18191808 |
T |
|
| Q |
210 |
gccggagcgcctcgtactcgaaccttggctggaggcattttctcta-ccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191807 |
gccggagcgcctcgtactcgaaccttggctggaggcattttctctacccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataac |
18191708 |
T |
|
| Q |
309 |
catctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191707 |
catctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctg |
18191638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 16337348 - 16337426
Alignment:
| Q |
10 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagaga |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
16337348 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacatggctagtttgccgagttccttagaga |
16337426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 42247894 - 42247850
Alignment:
| Q |
39 |
gcaccccttctcccgaagttacggggctattttgccgagttcctt |
83 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
42247894 |
gcaccccttctcccgaagttacggggtcattttgccgagttcctt |
42247850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 34659344 - 34658976
Alignment:
| Q |
10 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcgcgcccctagg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34659344 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccaagttccttagagagagttgtctcgcgcccctagg |
34659245 |
T |
|
| Q |
110 |
tattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34659244 |
tattctctacctacccacctgtgtcggtttcgggtacaggtaccattttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagc |
34659145 |
T |
|
| Q |
210 |
gccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataacc |
309 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659144 |
gccggagcgcctcgtactcgaatcttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataacc |
34659045 |
T |
|
| Q |
310 |
atctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659044 |
atctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattcacctg |
34658976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 8174997 - 8174936
Alignment:
| Q |
245 |
cattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataa |
307 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
8174997 |
cattttctctatcccttcttaccctacaaaaacaaggg-caccttgtgtgcttgaaccgataa |
8174936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 14404874 - 14404532
Alignment:
| Q |
10 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcgcgcccctagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404874 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcgcgcccctagg |
14404775 |
T |
|
| Q |
110 |
tattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404774 |
tattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaattacttcagc |
14404675 |
T |
|
| Q |
210 |
gccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataacc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14404674 |
gccggagcgcctcgtactcgaaccttggctggagccattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataacc |
14404575 |
T |
|
| Q |
310 |
atctttcggctaacctagcctcctccgtccctcgggaccaaca |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404574 |
atctttcggctaacctagcctcctccgtccctcgggaccaaca |
14404532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 45610202 - 45610235
Alignment:
| Q |
345 |
gaccaacaagaggtagtacaggaatattcacctg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45610202 |
gaccaacaagaggtagtacaggaatattcacctg |
45610235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 55512 - 55434
Alignment:
| Q |
10 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagaga |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
55512 |
ctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacatggctagtttgccgagttccttagaga |
55434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 7869276 - 7869347
Alignment:
| Q |
58 |
tacggggctattttgccgagttccttagagagagttgtctcgcgcccctaggtattctctacctacccacct |
129 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |||||||| | | |||||||||||||||||||||||||| |
|
|
| T |
7869276 |
tacgggtctattttatcgagttccttagagagggttgtctcacactcctaggtattctctacctacccacct |
7869347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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