View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_47 (Length: 374)
Name: NF10233A_low_47
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_47 |
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| [»] scaffold0095 (1 HSPs) |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: scaffold0095 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 15339 - 15693
Alignment:
| Q |
20 |
catcaacaatttcatcatcatcggatggaccagcaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgc |
119 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15339 |
catcaacaatttcatcatcatcggatggaccagtaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgc |
15438 |
T |
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| Q |
120 |
tcccttagacttctccctggagctcgatccatttcccgtcacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccaca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15439 |
tcccttagacttctccctggagctcgatccatttcccattacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccaca |
15538 |
T |
|
| Q |
220 |
tttaactgtccaacattaattcatatagaaaatgtaaataacaaaaccttgagatcgacggttgagcgaataaacaagacacggttgaattcaggatcct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15539 |
tttaactgtccaacattaattcatatagaaaatgtaaataacaaaaccttgagatcgacgtttgagcgaataaacaagacacggttgaattcaggatcct |
15638 |
T |
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| Q |
320 |
tgattattgtacgccattttcccaccccatgcttggcaactccagctttaagagc |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15639 |
tgattattgtacgccattttcccaccccatgcttggcaactccagctttaagagc |
15693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 39454401 - 39454047
Alignment:
| Q |
20 |
catcaacaatttcatcatcatcggatggaccagcaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgc |
119 |
Q |
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| T |
39454401 |
catcaacaatttcatcatcatcggatggaccagtaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgc |
39454302 |
T |
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| Q |
120 |
tcccttagacttctccctggagctcgatccatttcccgtcacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccaca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39454301 |
tcccttagacttctccctggagctcgatccatttcccattacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccaca |
39454202 |
T |
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| Q |
220 |
tttaactgtccaacattaattcatatagaaaatgtaaataacaaaaccttgagatcgacggttgagcgaataaacaagacacggttgaattcaggatcct |
319 |
Q |
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| T |
39454201 |
tttaactgtccaacattaattcatatagaaaatgtaaataacaaaaccttgagatcgacgtttgagcgaataaacaagacacggttgaattcaggatcct |
39454102 |
T |
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| Q |
320 |
tgattattgtacgccattttcccaccccatgcttggcaactccagctttaagagc |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39454101 |
tgattattgtacgccattttcccaccccatgcttggcaactccagctttaagagc |
39454047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 242
Target Start/End: Complemental strand, 39461919 - 39461739
Alignment:
| Q |
60 |
agtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctcccttagacttctccctggagctcgatccatttcccgtc |
159 |
Q |
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||||| |||||||||||| ||||||||||||||| || | ||| || | ||||||||||| ||||||||||||| |||| || ||||| || || | |
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| T |
39461919 |
agtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagacttctctatggaagtccatccacttgccatt |
39461820 |
T |
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| Q |
160 |
acactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatttaactgtccaacattaattca |
242 |
Q |
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|||| ||| |||||||| |||||||||||| |||||||||| ||||| |||||| ||||||| || ||| |||||||||||| |
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| T |
39461819 |
tcacttaaaattctccatgtatcctatccaa-cccacataaccaaacctttagattcacattt-acagtctaacattaattca |
39461739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 38813533 - 38813364
Alignment:
| Q |
66 |
agccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctcccttagacttctccctggagctcgatccatttcccgtcacactc |
165 |
Q |
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|||||| ||||||||| ||||| |||| || ||||| || ||||||||||||| || ||| || |||| |||| ||||||||| || ||| ||| |
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| T |
38813533 |
agccatggagttgtcacgctgttctggtgcctgatgacgcacccttttgattgctagctgagagttgtccccggaggatgatccatttgccttcaggctc |
38813434 |
T |
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| Q |
166 |
aaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatttaactgtccaacatt |
236 |
Q |
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| T |
38813433 |
atatttctccatttatcctatccaa-ccaacataaccaaaccttgagattcacatttgatggtccaacatt |
38813364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 368
Target Start/End: Complemental strand, 38813317 - 38813212
Alignment:
| Q |
263 |
aaaccttgagatcgacggttgagcgaataaacaagacacggttgaattcaggatccttgattattgtacgccattttcccaccccatgcttggcaactcc |
362 |
Q |
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||||||||||||| | ||||||| ||| |||| ||| |||| || ||||||||||||| |||| | | |||||| ||||||||||| ||| ||||||| |
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| T |
38813317 |
aaaccttgagatcaatatttgagcggatatacaacacatggttaaactcaggatccttgagtattttgctccatttccccaccccatgtttgacaactcc |
38813218 |
T |
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| Q |
363 |
agcttt |
368 |
Q |
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|||||| |
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| T |
38813217 |
agcttt |
38813212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 39461630 - 39461570
Alignment:
| Q |
310 |
tcaggatccttgattattgtacgccattttcccaccccatgcttggcaactccagctttaag |
371 |
Q |
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||||||||||||| ||||||||||| ||| ||||||| ||||||| | ||||||||||||| |
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| T |
39461630 |
tcaggatccttgagtattgtacgcc-tttacccacccaatgcttgagagctccagctttaag |
39461570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 60 - 239
Target Start/End: Complemental strand, 12079604 - 12079423
Alignment:
| Q |
60 |
agtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctcccttagacttctccctggagctcgatccatttcccgtc |
159 |
Q |
| |
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||||| ||||||||||||||| || ||| ||||| || ||| || || |||||| ||||||||||| | ||||||||| || | ||||| || || || |
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| T |
12079604 |
agtgacagccatagagttgtcctcatgtcttggtgcctgataatgcacccttttcattgctccctttggcttctccctcgaagcccatccacttgccatc |
12079505 |
T |
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| Q |
160 |
acactcaaatttctccatttatcctatccaac--cccacataacaaaaccattagatccacatttaactgtccaacattaat |
239 |
Q |
| |
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|| |||||||||| |||||||||||||||||| ||||||||| ||||| ||||||||| |||| || ||||||||||||| |
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| T |
12079504 |
acgctcaaatttcgccatttatcctatccaacaacccacataaagaaacctttagatccagattttacggtccaacattaat |
12079423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 12086359 - 12086299
Alignment:
| Q |
312 |
aggatccttgattattgtacgccattttcccaccccatgcttggcaactccagctttaaga |
372 |
Q |
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| T |
12086359 |
aggatccttgagtattgtatgccatttgcccaccccatgcttgacaactccagctttaaga |
12086299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 12079338 - 12079269
Alignment:
| Q |
302 |
ggttgaattcaggatccttgattattgtacgccattttcccaccccatgcttggcaactccagctttaag |
371 |
Q |
| |
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|||| |||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
12079338 |
ggttaaattcaggatccttgaggatcgtacgccatttacccaccccatgcttgataactccagctttaag |
12079269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 263 - 369
Target Start/End: Original strand, 39409562 - 39409668
Alignment:
| Q |
263 |
aaaccttgagatcgacggttgagcgaataaacaagacacggttgaattcaggatccttgattattgtacgccattttcccaccccatgcttggcaactcc |
362 |
Q |
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|||||||||||| ||| |||||| |||| | ||||||||||| || || |||| ||||| || ||||| |||||| ||||||||||||||| ||||||| |
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| T |
39409562 |
aaaccttgagattgacatttgagcaaatatataagacacggttaaactctggattcttgagtactgtacaccatttacccaccccatgcttgacaactcc |
39409661 |
T |
|
| Q |
363 |
agcttta |
369 |
Q |
| |
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||||||| |
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| T |
39409662 |
agcttta |
39409668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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