View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_53 (Length: 361)

Name: NF10233A_low_53
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_53
NF10233A_low_53
[»] chr4 (4 HSPs)
chr4 (13-341)||(5313554-5313886)
chr4 (140-246)||(16839429-16839535)
chr4 (147-337)||(11355130-11355322)
chr4 (28-80)||(11355384-11355436)
[»] chr1 (2 HSPs)
chr1 (138-340)||(30737674-30737880)
chr1 (101-228)||(28451574-28451701)
[»] chr6 (1 HSPs)
chr6 (32-246)||(7499954-7500168)
[»] chr5 (2 HSPs)
chr5 (32-246)||(9504983-9505197)
chr5 (13-156)||(33050399-33050542)
[»] chr2 (3 HSPs)
chr2 (140-246)||(45495640-45495746)
chr2 (140-246)||(45503382-45503488)
chr2 (32-237)||(5986896-5987101)
[»] scaffold0014 (1 HSPs)
scaffold0014 (147-246)||(62533-62632)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 5313554 - 5313886
Alignment:
Q  13 gtatctggatacacgatgctcaaatcacatgacatgtaaaa-agtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataa 111  Q
    |||| |||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||||||| |||||||||  ||||||||||||||||||||||    
T  5313554 gtatatggatacacgatgctcaaatcatatgacaggtaaaaaagtcttggttctctgagttagatggttcaattagtaaaaagacaagatttgcaaataa 5313653  T
Q  112 tagtatagtttgtgttaaaagaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgaga 211  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||| | ||||||||||    
T  5313654 tagtatagtttgtgttaaaggaactagtaaagtattgattcatagaaaagatggcaagaaaacatatatcactgatgtattgtatgttcaaaatatgaga 5313753  T
Q  212 agtaatctcattagtataggccaattgctgcaaaatg--tctactacgaaaatggaagcacatgctataaggg-ttttttattgcaagaatagattgatc 308  Q
    |||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5313754 agtaatctcattagtacaggccaattgctgcaaaatgtatatactatgaaaatggaagcacatgctacaagggtttttttattgcaagaatagattgatc 5313853  T
Q  309 ttgaaggctccattgtcaaagaagagaactttc 341  Q
    ||||||||||||||||||||||||| |||||||    
T  5313854 ttgaaggctccattgtcaaagaagaaaactttc 5313886  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 16839535 - 16839429
Alignment:
Q  140 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 239  Q
    |||||| |||||||||  || |||||||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  16839535 aaagtactgattcataagaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 16839436  T
Q  240 tgcaaaa 246  Q
    |||||||    
T  16839435 tgcaaaa 16839429  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 337
Target Start/End: Complemental strand, 11355322 - 11355130
Alignment:
Q  147 tgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaa 246  Q
    |||||||| | ||||||||||||||||| |  ||||||| ||| |||||||| ||||| ||||  |||||||||||||||||||| || ||  |||| ||    
T  11355322 tgattcatgggaaagatggcaagaaagcttgcattactggtgtgttatatgtgccaaacatgaagagtaatctcattagtataggtcagttattgcagaa 11355223  T
Q  247 tg--tctactacgaaaatggaagcacatgctataagggttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaagagaac 337  Q
     |  | ||||| ||||||||| | |||  |||| | ||||||| |  ||||||  ||||||||  | |||||||||||||||||||| |||||    
T  11355222 aggctatactatgaaaatggaggaacaaactatgatggtttttgacagcaagagaagattgattctaaaggctccattgtcaaagaaaagaac 11355130  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 11355436 - 11355384
Alignment:
Q  28 atgctcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgatt 80  Q
    ||||||||| ||||||||| |||||| ||| ||||| || |||||||||||||    
T  11355436 atgctcaaagcacatgacaggtaaaatgtcatggttttctgagttagatgatt 11355384  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 138 - 340
Target Start/End: Original strand, 30737674 - 30737880
Alignment:
Q  138 gtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaatt 237  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| | |||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  30737674 gtaaagtattgattcatagaaaaaatggcaagaaagcatgtatcattgatgtgttatatgtgccaaatatgagaagtaatctcattagtataggtcaatt 30737773  T
Q  238 gctgcaaaatg--tctactacgaaaatggaagcacatgctataaggg--ttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaaga 333  Q
     |||||||| |  | | |||  || ||||||||| |  |||| ||||  |||||||||| ||| |||| |||||| |||| || || ||||||||| |||    
T  30737774 actgcaaaagggttgtgctattaagatggaagcaaaaactatgagggttttttttattggaaggataggttgatcctgaaagccccgttgtcaaagcaga 30737873  T
Q  334 gaacttt 340  Q
    |||||||    
T  30737874 gaacttt 30737880  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 28451701 - 28451574
Alignment:
Q  101 tttgcaaataatagtatagtttgtgttaaaagaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtac 200  Q
    |||||| ||||||| ||||| |||| | || ||| | ||||||||   ||||| | |||||||||||||||||||| ||| ||| |||| || ||||| |    
T  28451701 tttgcagataatagaatagtgtgtgctgaaggaattggtaaagtaccaattcacataaaagatggcaagaaagcatatatcacttatgtgttttatgtgc 28451602  T
Q  201 caaatatgagaagtaatctcattagtat 228  Q
     |||||||||||| ||||| || |||||    
T  28451601 taaatatgagaagcaatcttatgagtat 28451574  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 246
Target Start/End: Complemental strand, 7500168 - 7499954
Alignment:
Q  32 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 131  Q
    ||||||||||||||||| || || ||||||||||| || |||||||||||| |||    ||| | |||||||||| | ||| ||||||||||||   |      
T  7500168 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagagaatcgtatagtttgtgcagatg 7500069  T
Q  132 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 231  Q
    | | | | |||||| |||||||||| || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  7500068 gtattgggaaagtactgattcataggaaggatgacaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 7499969  T
Q  232 ccaattgctgcaaaa 246  Q
      |||| ||||||||    
T  7499968 ttaattactgcaaaa 7499954  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 9504983 - 9505197
Alignment:
Q  32 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 131  Q
    ||||||||||||||||| || || ||||||||||| || |||||||||||| |||    ||| | |||||||||| | |||| |||||||||||          
T  9504983 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagacaatattatagtttgtgcagctg 9505082  T
Q  132 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 231  Q
    | | | | |||||| | |||||||| || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  9505083 gtattgggaaagtactaattcataggaaggatgtcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 9505182  T
Q  232 ccaattgctgcaaaa 246  Q
     ||||| || |||||    
T  9505183 tcaattactacaaaa 9505197  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 33050399 - 33050542
Alignment:
Q  13 gtatctggatacacgatgctcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataat 112  Q
    ||||||||||||| ||||||||||| |||| |||||| |||||||||||| |||  | |||||| |||||||||    ||||| |||||| ||| |||||    
T  33050399 gtatctggatacatgatgctcaaattacataacatgttaaaagtcttggtactctaaattagattattcaattaatagaaagataagattcgcagataat 33050498  T
Q  113 agtatagtttgtgttaaaagaactagtaaagtattgattcatag 156  Q
    ||||| | || |||| || ||| | |||| || |||||||||||    
T  33050499 agtatcgattatgttgaaggaaatggtaatgtgttgattcatag 33050542  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 45495746 - 45495640
Alignment:
Q  140 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 239  Q
    |||||| |||||||||| || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45495746 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45495647  T
Q  240 tgcaaaa 246  Q
    |||||||    
T  45495646 tgcaaaa 45495640  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 45503488 - 45503382
Alignment:
Q  140 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 239  Q
    |||||| |||||||||| || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45503488 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45503389  T
Q  240 tgcaaaa 246  Q
    |||||||    
T  45503388 tgcaaaa 45503382  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 5986896 - 5987101
Alignment:
Q  32 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 131  Q
    |||||||||||||||   || || ||||||||||| || |||||||||||| ||| |  ||| | |||||||||| | ||||||||||||||||     |    
T  5986896 tcaaatcacatgacagacaagaaatcttggttctctgaattagatgattcagttaacagaaaaataagatttgcagacaatagtatagtttgtgcagcta 5986995  T
Q  132 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 231  Q
      | | | |||||| |||||||||| || |||||||||||||| |  || |||||||| || ||||||||||| |||||||  | |||||||||||| ||    
T  5986996 atattggaaaagtactgattcataggaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaaacagtctcattagtattgg 5987095  T
Q  232 ccaatt 237  Q
     |||||    
T  5987096 tcaatt 5987101  T

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Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 62533 - 62632
Alignment:
Q  147 tgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaa 246  Q
    |||||||||| || |||||||||| ||| |  || |||||||| || ||||||||||| |||||||| ||||||| |||||| || |||||  |||||||    
T  62533 tgattcataggaaggatggcaagagagcctgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcagtagtattggtcaattattgcaaaa 62632  T

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