View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_55 (Length: 357)

Name: NF10233A_low_55
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_55
NF10233A_low_55
[»] chr5 (6 HSPs)
chr5 (21-356)||(13940465-13940799)
chr5 (92-356)||(27180361-27180626)
chr5 (230-356)||(41100308-41100434)
chr5 (228-315)||(7279337-7279424)
chr5 (287-356)||(7279433-7279502)
chr5 (282-339)||(39045919-39045976)
[»] chr4 (4 HSPs)
chr4 (92-327)||(5669392-5669627)
chr4 (252-356)||(3938913-3939017)
chr4 (276-330)||(39875905-39875959)
chr4 (323-356)||(5673251-5673284)
[»] chr6 (2 HSPs)
chr6 (90-356)||(23122495-23122761)
chr6 (197-356)||(1160677-1160836)
[»] chr7 (3 HSPs)
chr7 (90-356)||(7478794-7479060)
chr7 (252-356)||(18262051-18262155)
chr7 (230-356)||(33632129-33632255)
[»] chr3 (1 HSPs)
chr3 (252-356)||(30281147-30281251)
[»] scaffold0240 (1 HSPs)
scaffold0240 (252-356)||(16963-17066)


Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 356
Target Start/End: Original strand, 13940465 - 13940799
Alignment:
Q  21 atcaaatgctaaattactattacttgcttgtaaagaaaagagtttcacaatatccatcagttgttgttacatctggactcaaatctaaccaggttaaaag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13940465 atcaaatgctaaattactattacttgcttgtaaagaaaagagtttcacaatatccatcagttgttgttacatctggactcaaatctaaccaggctaaaag 13940564  T
Q  121 ctcaacctactttggtggagtagaactgagtgttcaagaggctattctcactaaatttaattttttcaaaggagggctcccttttagatatatgggggta 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  13940565 ctcaacctactttggtggagtagaactgagtgttcaagaggctattctcactaaatttaattttttcaaaggagagctccctattagatatat-ggggta 13940663  T
Q  221 cctttaacctccaaaaaacttattgttatgtagtgtcaacctttagtgaagagaataattagtaggattgaaaattggtcctctaagttgttatcctatg 320  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13940664 cctttatcctccaaaaaacttattgttatgcagtgtcaacctttagtgaagagaataattagtaggattgaaaattggtcctctaagttgttatcctatg 13940763  T
Q  321 ttggtagattgcaacttattaagtcagtgttgtttg 356  Q
    ||||||||||||||||||||||||||||||||||||    
T  13940764 ttggtagattgcaacttattaagtcagtgttgtttg 13940799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 92 - 356
Target Start/End: Complemental strand, 27180626 - 27180361
Alignment:
Q  92 tctggactcaaatctaaccaggttaaaagctcaacctactttggtggagtagaactgagtgttcaagaggctattctcactaaatttaattttttcaaag 191  Q
    |||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| ||  |||||    
T  27180626 tctggactcaaagctaaccaggctaaaagctcaatctactttgatggagtagaactgagtgttcaaaaggttattctcactaaatttaatcttaccaaag 27180527  T
Q  192 gagggctcccttttagatatatgggggtacctttaacctccaaaaaacttattgttatgtagtgtcaacc-tttagtgaagagaataattagtaggattg 290  Q
    ||  |||||||||||||||| | || | ||||||| ||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||    
T  27180526 gaatgctcccttttagatatcttggagcacctttatcctccaaaaaatttattgttatgcagtgtcagccttttagtgaagagaataattagtaggattg 27180427  T
Q  291 aaaattggtcctctaagttgttatcctatgttggtagattgcaacttattaagtcagtgttgtttg 356  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  27180426 aaaattggtcctttaagttgttatcctatgctggtagattgcaacttattaagttagtgttgtttg 27180361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 356
Target Start/End: Complemental strand, 41100434 - 41100308
Alignment:
Q  230 tccaaaaaacttattgttatgtagtgtcaacctttagtgaagagaataattagtaggattgaaaattggtcctctaagttgttatcctatgttggtagat 329  Q
    ||||||||| |  |||||||  ||||||||||| | |||||||| || ||| |||| || ||||||||||| |||||||||||||| |||| | |||| |    
T  41100434 tccaaaaaattatttgttattcagtgtcaacctctggtgaagaggatcatttgtagaatcgaaaattggtcttctaagttgttatcgtatgctagtaggt 41100335  T
Q  330 tgcaacttattaagtcagtgttgtttg 356  Q
    | |||||||| || ||||| |||||||    
T  41100334 tacaacttatcaaatcagtcttgtttg 41100308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 315
Target Start/End: Original strand, 7279337 - 7279424
Alignment:
Q  228 cctccaaaaaacttattgttatgtagtgtcaacctttagtgaagagaataattagtaggattgaaaattggtcctctaagttgttatc 315  Q
    ||||||||||| |  |||||||  ||||||||||||| | |||||  || ||| |||| |||||||||||||| || |||||||||||    
T  7279337 cctccaaaaaattatttgttattcagtgtcaacctttggcgaagaagatcatttgtagaattgaaaattggtcttccaagttgttatc 7279424  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 7279433 - 7279502
Alignment:
Q  287 attgaaaattggtcctctaagttgttatcctatgttggtagattgcaacttattaagtcagtgttgtttg 356  Q
    |||||||||||||| || ||||||||||| |||| ||| || || |||||||| || ||||| |||||||    
T  7279433 attgaaaattggtcttccaagttgttatcgtatgctggaaggttacaacttatcaaatcagtcttgtttg 7279502  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 39045976 - 39045919
Alignment:
Q  282 gtaggattgaaaattggtcctctaagttgttatcctatgttggtagattgcaacttat 339  Q
    |||| ||||||||||| || |||||||||||||| |||| |||||| || ||||||||    
T  39045976 gtagaattgaaaattgatcttctaagttgttatcttatgctggtagcttacaacttat 39045919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 92 - 327
Target Start/End: Original strand, 5669392 - 5669627
Alignment:
Q  92 tctggactcaaatctaaccaggttaaaagctcaacctactttggtggagtagaactgagtgttcaagaggctattctcactaaatttaattttttcaaag 191  Q
    ||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  5669392 tctggactcgaagctaaccaggctaaaagctcaatctactttggtggagtagaactgagtgttcaagaggctattctcactaaatttaatcttatcaaag 5669491  T
Q  192 gagggctcccttttagatatatgggggtacctttaacctccaaaaaacttattgttatgtagtgtcaacctttagtgaagagaataattagtaggattga 291  Q
    ||| |||||||||||||||| | |||||||||||| |||||||||||||   ||||||| | ||| | |||||||||||||| |||||||||||||||||    
T  5669492 gagagctcccttttagatattttggggtacctttatcctccaaaaaactgtctgttatgcaatgttagcctttagtgaagaggataattagtaggattga 5669591  T
Q  292 aaattggtcctctaagttgttatcctatgttggtag 327  Q
    |||||||||||||||||||||||| |||| ||||||    
T  5669592 aaattggtcctctaagttgttatcatatgctggtag 5669627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 3939017 - 3938913
Alignment:
Q  252 agtgtcaacctttagtgaagagaataattagtaggattgaaaattggtcctctaagttgttatcctatgttggtagattgcaacttattaagtcagtgtt 351  Q
    ||||||||||||| |||||||| || ||| |||| || |||||||||   |||||||||||||| |||| |||||| || |||||||| || ||||| ||    
T  3939017 agtgtcaacctttggtgaagaggatcatttgtagaatcgaaaattggcattctaagttgttatcgtatgctggtaggttacaacttatcaaatcagtctt 3938918  T
Q  352 gtttg 356  Q
    |||||    
T  3938917 gtttg 3938913  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 39875905 - 39875959
Alignment:
Q  276 taattagtaggattgaaaattggtcctctaagttgttatcctatgttggtagatt 330  Q
    ||||||||||||||||||  |||||||||||||||||||| |||||  |||||||    
T  39875905 taattagtaggattgaaacgtggtcctctaagttgttatcttatgtatgtagatt 39875959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 5673251 - 5673284
Alignment:
Q  323 ggtagattgcaacttattaagtcagtgttgtttg 356  Q
    ||||||||||||||||||||||||||||||||||    
T  5673251 ggtagattgcaacttattaagtcagtgttgtttg 5673284  T

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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 90 - 356
Target Start/End: Original strand, 23122495 - 23122761
Alignment:
Q  90 catctggactcaaatctaaccaggttaaaagctcaacctactttggtggagtagaactgagtgttcaagaggctattctcactaaatttaattttttcaa 189  Q
    ||||||| |||||| |||||||    |||||||||| ||| |||||||| |||||  | |||| ||||||||| || || || || |||| | ||  |||    
T  23122495 catctggtctcaaagctaaccaatccaaaagctcaatctattttggtggtgtagatattagtgctcaagaggcaatccttaccaagtttagtcttaccaa 23122594  T
Q  190 aggagggctcccttttagatatatgggggtacctttaacctccaaaaaacttattgttatgtagtgtcaacctttagtgaagagaataattagtaggatt 289  Q
    ||| |  ||||| ||||  ||| ||||||| |||||| ||||||||||| | | | ||||| | ||||||||||| || |||| ||| || || ||||||    
T  23122595 aggtgatctcccgtttaattatttgggggttcctttatcctccaaaaaattaactattatgcaatgtcaacctttggtaaagaaaattatcagcaggatt 23122694  T
Q  290 gaaaattggtcctctaagttgttatcctatgttggtagattgcaacttattaagtcagtgttgtttg 356  Q
    ||||| ||||| || ||||||||||| ||||  || ||||| |||||||||||||||||||| ||||    
T  23122695 gaaaactggtcatcaaagttgttatcttatgccggaagattacaacttattaagtcagtgttatttg 23122761  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 356
Target Start/End: Original strand, 1160677 - 1160836
Alignment:
Q  197 ctcccttttagatatatgggggtacctttaacctccaaaaaacttattgttatgtagtgtcaacctttagtgaagagaataattagtaggattgaaaatt 296  Q
    ||||| |||| |||| ||||||| |||||| |||| |||||| | | ||||||| | ||||||||||| || |||| ||| || || ||||||||||| |    
T  1160677 ctcccgtttaaatatttgggggttcctttatcctctaaaaaattaactgttatgcaatgtcaacctttggtaaagaaaattatcagcaggattgaaaact 1160776  T
Q  297 ggtcctctaagttgttatcctatgttggtagattgcaacttattaagtcagtgttgtttg 356  Q
    |||| || ||||||||||| ||||  || ||||| |||||||||||||||||||| ||||    
T  1160777 ggtcatcaaagttgttatcttatgccggaagattacaacttattaagtcagtgttatttg 1160836  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 356
Target Start/End: Complemental strand, 7479060 - 7478794
Alignment:
Q  90 catctggactcaaatctaaccaggttaaaagctcaacctactttggtggagtagaactgagtgttcaagaggctattctcactaaatttaattttttcaa 189  Q
    ||||||| |||||| |||||||    |||||||||  ||| |||||||| ||||   | |||| ||||||||| || || || || |||| | || ||||    
T  7479060 catctggtctcaaagctaaccaatccaaaagctcagtctattttggtggtgtagctattagtgctcaagaggcaatccttaccaagtttagtcttatcaa 7478961  T
Q  190 aggagggctcccttttagatatatgggggtacctttaacctccaaaaaacttattgttatgtagtgtcaacctttagtgaagagaataattagtaggatt 289  Q
    ||| |  ||||| |||| |||| ||||||| |||||| ||||||||||| | | ||||||| | ||  ||||||| || |||| ||| || |  ||||||    
T  7478960 aggtgatctcccgtttaaatatttgggggttcctttatcctccaaaaaattaactgttatgcaatgataacctttggtaaagaaaattatcatcaggatt 7478861  T
Q  290 gaaaattggtcctctaagttgttatcctatgttggtagattgcaacttattaagtcagtgttgtttg 356  Q
    ||||| ||||| || ||||||||||| ||||  || ||||| |||||||||||||||||||| ||||    
T  7478860 gaaaactggtcatcaaagttgttatcttatgccggaagattacaacttattaagtcagtgttatttg 7478794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 18262155 - 18262051
Alignment:
Q  252 agtgtcaacctttagtgaagagaataattagtaggattgaaaattggtcctctaagttgttatcctatgttggtagattgcaacttattaagtcagtgtt 351  Q
    ||||||||||||| |||||||| || ||| |||| || |||||||||||  ||||||||||||| |||| |||||| || |||||||| || ||||| ||    
T  18262155 agtgtcaacctttggtgaagaggatcatttgtagaatcgaaaattggtctcctaagttgttatcgtatgctggtaggttacaacttatcaaatcagtctt 18262056  T
Q  352 gtttg 356  Q
    |||||    
T  18262055 gtttg 18262051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 356
Target Start/End: Complemental strand, 33632255 - 33632129
Alignment:
Q  230 tccaaaaaacttattgttatgtagtgtcaacctttagtgaagagaataattagtaggattgaaaattggtcctctaagttgttatcctatgttggtagat 329  Q
    ||||||||| |  |||||||  ||||||||||||  |||||||| || |||  ||| || ||||||||||| |||||||| ||||| |||| |||||| |    
T  33632255 tccaaaaaattatttgttattcagtgtcaaccttaggtgaagaggatcatttatagaatcgaaaattggtcttctaagttcttatcgtatgctggtaggt 33632156  T
Q  330 tgcaacttattaagtcagtgttgtttg 356  Q
    | |||||||| || ||||| |||||||    
T  33632155 tacaacttatcaaatcagtcttgtttg 33632129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 30281251 - 30281147
Alignment:
Q  252 agtgtcaacctttagtgaagagaataattagtaggattgaaaattggtcctctaagttgttatcctatgttggtagattgcaacttattaagtcagtgtt 351  Q
    ||||||||||||| |||||||| |||||| |||| || |||||||||   |||||| ||||||| |||| |||||| || |||||||| || ||||| ||    
T  30281251 agtgtcaacctttggtgaagaggataatttgtagaatcgaaaattggaattctaagatgttatcgtatgctggtaggttacaacttatcaaatcagtctt 30281152  T
Q  352 gtttg 356  Q
    |||||    
T  30281151 gtttg 30281147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 16963 - 17066
Alignment:
Q  252 agtgtcaacctttagtgaagagaataattagtaggattgaaaattggtcctctaagttgttatcctatgttggtagattgcaacttattaagtcagtgtt 351  Q
    ||||||||||||| |||||||| || ||| |||| || ||||||||||| |||| ||||||||  |||| |||||| || |||||||| || ||||| ||    
T  16963 agtgtcaacctttggtgaagaggattatttgtagaatcgaaaattggtcttctaggttgttat-gtatgctggtaggttacaacttatcaaatcagtctt 17061  T
Q  352 gtttg 356  Q
    |||||    
T  17062 gtttg 17066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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