View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_6 (Length: 495)

Name: NF10233A_low_6
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_6
NF10233A_low_6
[»] chr3 (5 HSPs)
chr3 (1-215)||(11983398-11983612)
chr3 (122-215)||(11970363-11970456)
chr3 (295-378)||(11983693-11983776)
chr3 (295-378)||(11970199-11970282)
chr3 (79-135)||(11970379-11970435)
[»] scaffold0144 (2 HSPs)
scaffold0144 (34-189)||(12616-12771)
scaffold0144 (143-199)||(12670-12726)
[»] chr4 (5 HSPs)
chr4 (58-146)||(55782420-55782508)
chr4 (60-146)||(55846602-55846688)
chr4 (388-439)||(805459-805510)
chr4 (143-199)||(55782441-55782497)
chr4 (143-199)||(55846621-55846677)
[»] scaffold0208 (1 HSPs)
scaffold0208 (295-378)||(14275-14358)
[»] chr7 (1 HSPs)
chr7 (295-378)||(10572510-10572593)
[»] chr1 (2 HSPs)
chr1 (56-133)||(19841622-19841702)
chr1 (1-71)||(37227839-37227909)
[»] chr2 (4 HSPs)
chr2 (56-133)||(21177482-21177562)
chr2 (1-71)||(21156058-21156128)
chr2 (39-71)||(27973769-27973801)
chr2 (39-71)||(28060298-28060330)
[»] chr8 (5 HSPs)
chr8 (56-93)||(17061177-17061214)
chr8 (56-93)||(17587144-17587181)
chr8 (56-93)||(17591443-17591480)
chr8 (101-133)||(17061376-17061408)
chr8 (101-133)||(17586950-17586982)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 11983398 - 11983612
Alignment:
Q  1 tcatatatgataagtttgaacctgnnnnnnnnncatctttttgctaaaacggagttccggtgatgaagacagcgccggtgatgaagacaaacacagcaac 100  Q
    ||||||||||||||||||||||||         |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11983398 tcatatatgataagtttgaacctgtttttttttcatcattttgcgaaaacggagttccggtgatgaagacagcgccggtgatgaagacaaacacaacaac 11983497  T
Q  101 ggtttccggcgaggttgtgagcgtttggtttcggtttccgactgatgaaggcaaccacagtgacggtttccggcaaggttgtaagcgtttggtttcggtg 200  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  11983498 ggtttccagcgaggttttgagcgtttggtttcggtttccgactgatgaaggcaaacacagtgacggtttccggcgaggttgtgagcgtttggtttcggtg 11983597  T
Q  201 acggttatggcgaag 215  Q
    |||||||||||||||    
T  11983598 acggttatggcgaag 11983612  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 11970456 - 11970363
Alignment:
Q  122 cgtttggtttcggtttccgactgatgaaggcaaccacagtgacggtttccggcaaggttgtaagcgtttggtttcggtgacggttatggcgaag 215  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||    
T  11970456 cgtttggtttcggtttccgactgatgaaggcaaacacagtgacggtttccggcgaggttgtgagcgtttggtttcggtgatggttatggcgaag 11970363  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 295 - 378
Target Start/End: Original strand, 11983693 - 11983776
Alignment:
Q  295 ttggtgaacgactgtgttgttgatggtgaacgacggtgacggaagattgatgatgaacgacggtggtgggagtttgttacaggt 378  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11983693 ttggtgaacgacggtgttgttgatggtgaacgacggtgacggaagattgatgatgaacgacggtggtgggagtttgctacaggt 11983776  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 295 - 378
Target Start/End: Complemental strand, 11970282 - 11970199
Alignment:
Q  295 ttggtgaacgactgtgttgttgatggtgaacgacggtgacggaagattgatgatgaacgacggtggtgggagtttgttacaggt 378  Q
    |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  11970282 ttggtgaacgacggtgttgttgatggtgaacgacggtgatagaagattgatgatgaacgacggtggtgggagtttgttacaggt 11970199  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 11970435 - 11970379
Alignment:
Q  79 tgatgaagacaaacacagcaacggtttccggcgaggttgtgagcgtttggtttcggt 135  Q
    |||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  11970435 tgatgaaggcaaacacagtgacggtttccggcgaggttgtgagcgtttggtttcggt 11970379  T

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Target: scaffold0144 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 12771 - 12616
Alignment:
Q  34 catctttttgctaaaacggagttccggtgatgaagacagcgccggtgatgaagacaaacacagcaacggtttccggcgaggttgtgagcgtttggtttcg 133  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12771 catctttttgcgaaaacggagttccggtgatgaagaaagcgccggtgatgaagacaaacacagcaacggtttccggcgaggttgtgagcgtttggtttcg 12672  T
Q  134 gtttccgactgatgaaggcaaccacagtgacggtttccggcaaggttgtaagcgtt 189  Q
    ||||||||||||||||||||| |||||||||||||| |||| | ||||| ||||||    
T  12671 gtttccgactgatgaaggcaaacacagtgacggttttcggcgaagttgtgagcgtt 12616  T

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Target: scaffold0144; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 12726 - 12670
Alignment:
Q  143 tgatgaaggcaaccacagtgacggtttccggcaaggttgtaagcgtttggtttcggt 199  Q
    |||||||| ||| |||||  |||||||||||| ||||||| ||||||||||||||||    
T  12726 tgatgaagacaaacacagcaacggtttccggcgaggttgtgagcgtttggtttcggt 12670  T

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Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 55782420 - 55782508
Alignment:
Q  58 cggtgatgaagacagcgccggtgatgaagacaaacacagcaacggtttccggcgaggttgtgagcgtttggtttcggtttccgactgat 146  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55782420 cggtgatgaagacagcgccggtgatgaagacaaacacagcgacggtttccggcgaggttgtgagcgtttggtttcggtttccgactgat 55782508  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 55846602 - 55846688
Alignment:
Q  60 gtgatgaagacagcgccggtgatgaagacaaacacagcaacggtttccggcgaggttgtgagcgtttggtttcggtttccgactgat 146  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55846602 gtgatgaagacagcgccggtgatgaagacaaacacagcgacggtttccggcgaggttgtgagcgtttggtttcggtttccgactgat 55846688  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 805510 - 805459
Alignment:
Q  388 tggtgagcaaccggttacgatggtgcgcgccggagacggcgaacggtgactg 439  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  805510 tggtgagcaaccggttacgatggtgcgcgacggcgacggcgaacggtgactg 805459  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 55782441 - 55782497
Alignment:
Q  143 tgatgaaggcaaccacagtgacggtttccggcaaggttgtaagcgtttggtttcggt 199  Q
    |||||||| ||| ||||| ||||||||||||| ||||||| ||||||||||||||||    
T  55782441 tgatgaagacaaacacagcgacggtttccggcgaggttgtgagcgtttggtttcggt 55782497  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 55846621 - 55846677
Alignment:
Q  143 tgatgaaggcaaccacagtgacggtttccggcaaggttgtaagcgtttggtttcggt 199  Q
    |||||||| ||| ||||| ||||||||||||| ||||||| ||||||||||||||||    
T  55846621 tgatgaagacaaacacagcgacggtttccggcgaggttgtgagcgtttggtttcggt 55846677  T

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Target: scaffold0208 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 295 - 378
Target Start/End: Complemental strand, 14358 - 14275
Alignment:
Q  295 ttggtgaacgactgtgttgttgatggtgaacgacggtgacggaagattgatgatgaacgacggtggtgggagtttgttacaggt 378  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  14358 ttggtgaacgacgatgttgttgatggtgaacgacggtgacgaaagattgatggtgaacgacggtggtgggagtttgttacaggt 14275  T

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Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 295 - 378
Target Start/End: Original strand, 10572510 - 10572593
Alignment:
Q  295 ttggtgaacgactgtgttgttgatggtgaacgacggtgacggaagattgatgatgaacgacggtggtgggagtttgttacaggt 378  Q
    ||||||||||||  ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  10572510 ttggtgaacgacgatgttgttgatggttaacgacggtaacggaagattgatggtgaacgacggtggtgggagtttgttacaggt 10572593  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 19841702 - 19841622
Alignment:
Q  56 tccggtgatgaagacagcgccggtgatgaagacaaacacagcaac---ggtttccggcgaggttgtgagcgtttggtttcg 133  Q
    |||||||||||||| |||| ||||||||||||||||||| || ||   |||||||||||||||||||||||||||||||||    
T  19841702 tccggtgatgaagaaagcgtcggtgatgaagacaaacacggcgacagtggtttccggcgaggttgtgagcgtttggtttcg 19841622  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 37227839 - 37227909
Alignment:
Q  1 tcatatatgataagtttgaacctgnnnnnnnnncatctttttgctaaaacggagttccggtgatgaagaca 71  Q
    ||||||||||||||||||||||||         |||| |||||| ||||||||||||||||||||||||||    
T  37227839 tcatatatgataagtttgaacctgtttctttttcatcattttgcgaaaacggagttccggtgatgaagaca 37227909  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 21177482 - 21177562
Alignment:
Q  56 tccggtgatgaagacagcgccggtgatgaagacaaacacagcaac---ggtttccggcgaggttgtgagcgtttggtttcg 133  Q
    |||||||||||||| |||| |||||||||||||||||||| | ||   ||||||||||||||||||||| |||||||||||    
T  21177482 tccggtgatgaagaaagcgtcggtgatgaagacaaacacaacgacggtggtttccggcgaggttgtgagagtttggtttcg 21177562  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 21156128 - 21156058
Alignment:
Q  1 tcatatatgataagtttgaacctgnnnnnnnnncatctttttgctaaaacggagttccggtgatgaagaca 71  Q
    ||||||||||||||||||||||||         |||| |||||| ||||||||||||||||||||||||||    
T  21156128 tcatatatgataagtttgaacctgtttttttttcatcattttgcgaaaacggagttccggtgatgaagaca 21156058  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 27973769 - 27973801
Alignment:
Q  39 ttttgctaaaacggagttccggtgatgaagaca 71  Q
    |||||| ||||||||||||||||||||||||||    
T  27973769 ttttgcgaaaacggagttccggtgatgaagaca 27973801  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 28060298 - 28060330
Alignment:
Q  39 ttttgctaaaacggagttccggtgatgaagaca 71  Q
    |||||| ||||||||||||||||||||||||||    
T  28060298 ttttgcgaaaacggagttccggtgatgaagaca 28060330  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 17061177 - 17061214
Alignment:
Q  56 tccggtgatgaagacagcgccggtgatgaagacaaaca 93  Q
    |||||||||||||| |||||||||||||||||||||||    
T  17061177 tccggtgatgaagaaagcgccggtgatgaagacaaaca 17061214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 17587181 - 17587144
Alignment:
Q  56 tccggtgatgaagacagcgccggtgatgaagacaaaca 93  Q
    |||||||||||||| |||||||||||||||||||||||    
T  17587181 tccggtgatgaagaaagcgccggtgatgaagacaaaca 17587144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 17591480 - 17591443
Alignment:
Q  56 tccggtgatgaagacagcgccggtgatgaagacaaaca 93  Q
    |||||||||||||| |||||||||||||||||||||||    
T  17591480 tccggtgatgaagaaagcgccggtgatgaagacaaaca 17591443  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 17061376 - 17061408
Alignment:
Q  101 ggtttccggcgaggttgtgagcgtttggtttcg 133  Q
    |||||||||||||||||||||||||||||||||    
T  17061376 ggtttccggcgaggttgtgagcgtttggtttcg 17061408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 17586982 - 17586950
Alignment:
Q  101 ggtttccggcgaggttgtgagcgtttggtttcg 133  Q
    |||||||||||||||||||||||||||||||||    
T  17586982 ggtttccggcgaggttgtgagcgtttggtttcg 17586950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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