View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_74 (Length: 332)
Name: NF10233A_low_74
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_74 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 53466920 - 53467237
Alignment:
| Q |
14 |
tggacatcacatgatctttatcaaaaccatggtagcagagctgatggttcaacgtatagggttcgatctgctccttatgttgaaagtcttcatgacatgg |
113 |
Q |
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| T |
53466920 |
tggacatcacatgatctttatcaaaaccatggtcgcagagctgatggttcaacgtatagggttcgatctgctccttatgttgaaagtcttcatgacatgg |
53467019 |
T |
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| Q |
114 |
tggtgagacaacatgtcctgttgagtatggtggtgcaagtatatataaaaagcatccatttgaggggggcatacacaaatgaatggatggatgacccaca |
213 |
Q |
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| T |
53467020 |
tggtgagacaacatgtcctgttgagcatggtggtgcaagtatatataaaaagcatcaatttga-gggggcatacacaaatgaatggatggatgacccaca |
53467118 |
T |
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| Q |
214 |
cttgagagggagattgttgtgtagcaagtgtgaggtagaagttcaacattagatgaaaaagtagcaatatataagtgagaggatgcataagcccccaatg |
313 |
Q |
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| T |
53467119 |
cttgagagggagattgttgtgtagcaagtgtgaggtagaagtccaacattagatgaaaaagtagcaatatataagtgagaggatgcataagcccccaatg |
53467218 |
T |
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| Q |
314 |
ccttatgattttgaatgaa |
332 |
Q |
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| T |
53467219 |
ccttaagattttgaatgaa |
53467237 |
T |
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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 45636047 - 45635976
Alignment:
| Q |
184 |
atacacaaatgaatggatggatgacccacacttgagagggagattgttgtgtagcaagtgtgaggtagaagt |
255 |
Q |
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| T |
45636047 |
atacccaaatgaatggatggatgactcacacttgagagggagattgttgtgtaccaagtgtgagatagaagt |
45635976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 13154560 - 13154520
Alignment:
| Q |
215 |
ttgagagggagattgttgtgtagcaagtgtgaggtagaagt |
255 |
Q |
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| T |
13154560 |
ttgagaggaagattgttgtgtagcaagtatgagttagaagt |
13154520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 42730284 - 42730342
Alignment:
| Q |
204 |
atgacccacacttgagagggagattgttgtgtagcaagtgtgaggtagaagttcaacat |
262 |
Q |
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| T |
42730284 |
atgactcacacttgaggggaagattgttgtgtagcaagtctgagttagaagttccacat |
42730342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 28483750 - 28483780
Alignment:
| Q |
225 |
gattgttgtgtagcaagtgtgaggtagaagt |
255 |
Q |
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| T |
28483750 |
gattgttgtgtagcaagtgtgaggtagaagt |
28483780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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