View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_76 (Length: 330)
Name: NF10233A_low_76
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_76 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 6285328 - 6285513
Alignment:
| Q |
63 |
ttagagatccaacgtgattgacttcaatctttttcgttagttacaaagactcatagatcatgattaatactatatggactactagtaggttctaaatctt |
162 |
Q |
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| T |
6285328 |
ttagagatccaacgtgattgacttcaacctttttcgttagttacaaagactcatagatcatgattaatactatatggactactagtaggttctaaatctt |
6285427 |
T |
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| Q |
163 |
ctttaacagtcatttaaagacttctataaactttaattactttttatgcaggttttgtgtcaaagcagaacattgacgtggataag |
248 |
Q |
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| T |
6285428 |
ctttaacagtcatttaaagacttctataaactttaattactttttatgcaggttttgtgtcaaagcagaacattgacgtggataag |
6285513 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6285235 - 6285300
Alignment:
| Q |
1 |
atttagtgatattaatgttaattaatcattgtcaacattagtccaaattttctgcaaattgattag |
66 |
Q |
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| T |
6285235 |
atttagtgaaagtaatgttaattaatcattgtcaacattagtccaaattttctgcaaatggattag |
6285300 |
T |
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