View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_77 (Length: 330)

Name: NF10233A_low_77
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_77
NF10233A_low_77
[»] chr3 (12 HSPs)
chr3 (127-319)||(46495582-46495774)
chr3 (131-292)||(55423508-55423667)
chr3 (131-299)||(31282380-31282546)
chr3 (223-313)||(21515543-21515633)
chr3 (227-283)||(21128046-21128102)
chr3 (227-283)||(43346386-43346442)
chr3 (7-64)||(46495836-46495893)
chr3 (223-283)||(53624294-53624354)
chr3 (223-289)||(5123278-5123344)
chr3 (262-303)||(40241678-40241719)
chr3 (223-299)||(24403347-24403423)
chr3 (223-283)||(48867365-48867425)
[»] chr8 (11 HSPs)
chr8 (127-314)||(3138698-3138884)
chr8 (127-314)||(42835952-42836136)
chr8 (223-289)||(45395085-45395151)
chr8 (223-288)||(28735109-28735174)
chr8 (223-283)||(2421228-2421288)
chr8 (223-283)||(13366985-13367045)
chr8 (227-283)||(39515320-39515376)
chr8 (223-274)||(36070308-36070359)
chr8 (223-289)||(31262847-31262913)
chr8 (227-283)||(24069385-24069441)
chr8 (223-283)||(44606260-44606320)
[»] chr4 (11 HSPs)
chr4 (127-303)||(11243587-11243766)
chr4 (131-299)||(28656960-28657126)
chr4 (223-312)||(9791706-9791795)
chr4 (227-283)||(1188967-1189023)
chr4 (227-283)||(26393066-26393122)
chr4 (227-283)||(43419314-43419370)
chr4 (223-289)||(668504-668570)
chr4 (223-289)||(2162727-2162793)
chr4 (223-299)||(10168714-10168791)
chr4 (223-288)||(11438500-11438565)
chr4 (227-283)||(44503615-44503671)
[»] chr1 (10 HSPs)
chr1 (223-314)||(21507158-21507249)
chr1 (127-207)||(13876484-13876563)
chr1 (250-305)||(2628224-2628279)
chr1 (223-289)||(16757456-16757522)
chr1 (223-283)||(51726779-51726839)
chr1 (12-64)||(13876379-13876431)
chr1 (223-274)||(21277124-21277175)
chr1 (223-265)||(8092737-8092779)
chr1 (226-259)||(51299428-51299461)
chr1 (233-289)||(44795303-44795359)
[»] chr6 (7 HSPs)
chr6 (223-305)||(7312215-7312297)
chr6 (223-303)||(24756986-24757066)
chr6 (223-283)||(293575-293635)
chr6 (223-283)||(14328709-14328769)
chr6 (223-283)||(14421719-14421779)
chr6 (223-289)||(30231596-30231662)
chr6 (223-292)||(29677076-29677145)
[»] chr5 (9 HSPs)
chr5 (223-299)||(20539278-20539354)
chr5 (227-283)||(12830877-12830933)
chr5 (227-283)||(12862857-12862913)
chr5 (223-289)||(32757943-32758009)
chr5 (223-283)||(14210264-14210324)
chr5 (227-283)||(15856654-15856710)
chr5 (223-290)||(9169703-9169770)
chr5 (223-283)||(2167450-2167510)
chr5 (223-283)||(5383063-5383123)
[»] chr7 (4 HSPs)
chr7 (223-312)||(7354599-7354688)
chr7 (227-283)||(35484249-35484305)
chr7 (227-283)||(8661804-8661860)
chr7 (223-283)||(46458648-46458708)
[»] chr2 (11 HSPs)
chr2 (223-299)||(2277401-2277477)
chr2 (223-291)||(7436581-7436649)
chr2 (223-289)||(102113-102179)
chr2 (223-289)||(7753458-7753524)
chr2 (223-289)||(34147254-34147320)
chr2 (227-283)||(15850598-15850654)
chr2 (223-274)||(25570805-25570856)
chr2 (223-289)||(21664920-21664986)
chr2 (223-284)||(12959640-12959701)
chr2 (223-283)||(10367360-10367420)
chr2 (223-283)||(14509330-14509390)
[»] scaffold0176 (1 HSPs)
scaffold0176 (226-303)||(16143-16220)
[»] scaffold0128 (1 HSPs)
scaffold0128 (223-264)||(22123-22164)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 127 - 319
Target Start/End: Complemental strand, 46495774 - 46495582
Alignment:
Q  127 ttatgtgttgatgattcactgtaacatacgatatacctatatgatctagccgtcccctttttgaaaagaaaagatcaaaggttgaaattnnnnnnnttaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       ||||    
T  46495774 ttatgtgttgatgattcactgtaacatacgatatacctatatgatctagccgtcccctttttgaaaagaaaagatcaaaggctgaaattaaaaaaattaa 46495675  T
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaattaactaacgggatgt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46495674 taaggtctatgatggaccacctacaatgttggttcacctaatacatttgggtttaaagttaactgacatggatcaaattaactaacgggatgt 46495582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 131 - 292
Target Start/End: Complemental strand, 55423667 - 55423508
Alignment:
Q  131 gtgttgatgattcactgtaacatacgatatacctatatgatctagccgtcccctttttgaaaagaaaagatcaaag-gttgaaattnnnnnnnttaataa 229  Q
    ||||||||| |||| ||||||||||||||||| || ||||||||||||| || ||||||||||  ||||||||||  | |||||||       |||||||    
T  55423667 gtgttgatggttcattgtaacatacgatatacttaaatgatctagccgttccttttttgaaaa--aaagatcaaaaagatgaaattaaaaaa-ttaataa 55423571  T
Q  230 ggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactga 292  Q
    |||||| | |||||||||||||| |||||| ||||||| |||||||||||| |||||||||||    
T  55423570 ggtctacggtggaccacctacaaggttggtccacctaagacatttggggttgaagttaactga 55423508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 131 - 299
Target Start/End: Original strand, 31282380 - 31282546
Alignment:
Q  131 gtgttgatgattcactgtaacatacgatatacctatatgatctagccgtcccctttttgaaaagaaaagatcaaag-gttgaaattnnnnnnnttaataa 229  Q
    ||||||||| |||| ||||||||||||||||| || ||||||||||||| || ||||||||||  ||||||||||  | |||||||       |||||||    
T  31282380 gtgttgatggttcattgtaacatacgatatacttaaatgatctagccgttccttttttgaaaa--aaagatcaaaaagatgaaattaaaaaa-ttaataa 31282476  T
Q  230 ggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggat 299  Q
    |||||| | |||||||||||||| |||||| ||||||| | |||||||||| ||||||||||| ||||||    
T  31282477 ggtctacggtggaccacctacaaggttggtccacctaagatatttggggttgaagttaactgaaatggat 31282546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 21515543 - 21515633
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaattaactaacg 313  Q
    |||||||||| |||| ||||||||||||||| ||| | |||||||||||||||| |||||||||||| ||||  |||||| || |||||||    
T  21515543 ttaataaggtatatggtggaccacctacaatattgatccacctaatacatttggagttaaagttaaccgacagagatcaatttgactaacg 21515633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 21128102 - 21128046
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||| ||||||||||| ||||||||| ||||| | |||||| ||||||||    
T  21128102 taaggtctatggtggaccacctataatgttggtccaccttagacatttagggttaaa 21128046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 43346386 - 43346442
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||| ||||||||||| ||||||||| ||||| | |||||| ||||||||    
T  43346386 taaggtctatggtggaccacctataatgttggtccaccttagacatttagggttaaa 43346442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 46495893 - 46495836
Alignment:
Q  7 tggacatcattttaaattttgtttgttgannnnnnngggtttatttgatggaggtgta 64  Q
    |||||||||||||||||||||||||||||       | ||||||||||||||||||||    
T  46495893 tggacatcattttaaattttgtttgttgatttttccgagtttatttgatggaggtgta 46495836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 53624294 - 53624354
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||| ||||| | ||| ||||||||| ||||  |||||||||||||||||    
T  53624294 ttaataaggtctatggtggactatctataatgttggtccaccatatacatttggggttaaa 53624354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 5123278 - 5123344
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    ||||||||||||||| | |||||| |||||||||||| || || | ||||||| ||||||| |||||    
T  5123278 ttaataaggtctatggtagaccacatacaatgttggtccatcttaaacatttgaggttaaaattaac 5123344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 40241678 - 40241719
Alignment:
Q  262 acctaatacatttggggttaaagttaactgacatggatcaaa 303  Q
    ||||||||||||||| |||||||| ||||||||| |||||||    
T  40241678 acctaatacatttggagttaaagtcaactgacattgatcaaa 40241719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 24403423 - 24403347
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggat 299  Q
    |||||||||| |||| ||||| | ||| |||||| |||||||  | |||||| ||||||||||||||  ||||||||    
T  24403423 ttaataaggtttatggtggactatctataatgttagttcaccatagacatttagggttaaagttaacaaacatggat 24403347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 48867365 - 48867425
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||| ||||||| | |||||||||||| |||||||||||| | ||||||  |||||||    
T  48867365 ttaataaagtctatggtagaccacctacaaagttggttcaccttagacatttaaggttaaa 48867425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 127 - 314
Target Start/End: Original strand, 3138698 - 3138884
Alignment:
Q  127 ttatgtgttgatgattcactgtaacatacgatatacctatatgatctagccgtcccctttttgaaaagaaaagatcaaa-ggttgaaattnnnnnnntta 225  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || |||||||       |||    
T  3138698 ttatgtgttgatggttcactgtaacatacgatatacctatatgatctagctgtcctctttttgaaaa-aaaatatcaaatggatgaaatt-aaaaaatta 3138795  T
Q  226 ataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaattaactaacgg 314  Q
    |||||||| | | ||||||||| |   |||||||  |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  3138796 ataaggtcgacggtggaccaccaatggtgttggtctacctaatatatttggggttaaagttaactgacttggatcaaattgactaacgg 3138884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 314
Target Start/End: Complemental strand, 42836136 - 42835952
Alignment:
Q  127 ttatgtgttgatgattcactgtaacatacgatatacctatatgatctagccgtcccctttttgaaaagaaaagatcaaa-ggttgaaattnnnnnnntta 225  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| || |||||||       |||    
T  42836136 ttatgtgttgatggttcactgtaacatacgatatacctatatgatctagccgtcctctttttgaaaa-aaaatatcaaatggatgaaatt-aaaaaatta 42836039  T
Q  226 ataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaattaactaacgg 314  Q
    |||||||| |   ||||| || |||  ||||||| ||||||||| |||||||||||||||||||| || | ||||||| | ||||||||    
T  42836038 ataaggtcgacagtggactacttac--tgttggtccacctaatatatttggggttaaagttaactcactttgatcaaactgactaacgg 42835952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 45395151 - 45395085
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    |||||| |||||||||||||||||||||||| ||||| ||||  | | |||||| ||||||||||||    
T  45395151 ttaatacggtctatgatggaccacctacaatattggtccaccatagatatttggagttaaagttaac 45395085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 28735174 - 28735109
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaa 288  Q
    |||||| |||||||||||||||||||||||| ||||||||    | ||||||||||||||| ||||    
T  28735174 ttaatatggtctatgatggaccacctacaattttggttcatgatagacatttggggttaaacttaa 28735109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 2421228 - 2421288
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||||||||||| ||| || |||||||||||| | ||||||  |||||||    
T  2421228 ttaataaggtctatgatggaccatctataaagttggttcaccttagacatttaaggttaaa 2421288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 13366985 - 13367045
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||| ||||||||||| || |||||||||||| | ||||||  |||||||    
T  13366985 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaa 13367045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 39515376 - 39515320
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||||||||||| ||||||||| ||||| | |||||| | ||||||    
T  39515376 taaggtctatgatggaccacctataatgttggtccaccttagacatttagtgttaaa 39515320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 36070359 - 36070308
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacattt 274  Q
    ||||||||||||||| ||||||||||| || |||||||||||| | ||||||    
T  36070359 ttaataaggtctatggtggaccacctataaagttggttcaccttagacattt 36070308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 31262847 - 31262913
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    ||||||||| ||  ||||||||||| |||| ||||||||| || | ||||||| |||||||||||||    
T  31262847 ttaataaggcctgcgatggaccacccacaaagttggttcatcttagacatttgtggttaaagttaac 31262913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 24069385 - 24069441
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||| ||||||||||| ||||||||| ||||| | |||||| | ||||||    
T  24069385 taaggtctatggtggaccacctataatgttggtccaccttagacatttagtgttaaa 24069441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 44606320 - 44606260
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    |||| |||||||||| ||||||||||| || |||||||||||| | ||||||  |||||||    
T  44606320 ttaacaaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaa 44606260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 303
Target Start/End: Original strand, 11243587 - 11243766
Alignment:
Q  127 ttatgtgttgatgattcactgtaacatacgatatacctatatgatctagccgtcccctttttgaaaagaaaagatc-aaaggttgaaattnnnnnnntta 225  Q
    |||||||||||||||||| | |||||||| ||||||||| ||||||||||||| || |||||||||  |||| ||| |||||||||||||       |||    
T  11243587 ttatgtgttgatgattcattttaacatacaatatacctaaatgatctagccgttccttttttgaaagaaaaaaatcaaaaggttgaaatt-aaaaaatta 11243685  T
Q  226 ataaggtctatgatgg---accacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaa 303  Q
    ||||| | |||| |||   ||||||||||| |||||| ||||||| ||||||||| |||||||||||| ||||||||||||    
T  11243686 ataagttatatggtggaccaccacctacaaggttggtccacctaagacatttgggattaaagttaactaacatggatcaaa 11243766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 131 - 299
Target Start/End: Original strand, 28656960 - 28657126
Alignment:
Q  131 gtgttgatgattcactgtaacatacgatatacctatatgatctagccgtcccctttttgaaaagaaaagatcaaag-gttgaaattnnnnnnnttaataa 229  Q
    ||||||||| |||| |||||||||| |||||| || ||||||||||||| || ||||||||||  ||||||||||  | |||||||       |||||||    
T  28656960 gtgttgatggttcattgtaacatacaatatacttaaatgatctagccgttccttttttgaaaa--aaagatcaaaaagatgaaattaaaaaa-ttaataa 28657056  T
Q  230 ggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggat 299  Q
    |||||| | |||| ||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||||    
T  28657057 ggtctacggtggatcacctacaaggttggtccacctaagacatttggggttaaagttaactgaaatggat 28657126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 9791706 - 9791795
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaattaactaac 312  Q
    |||||||||||||   ||||||||||||||| ||  | |||||||||||||||||||||| |||||||||||| ||||||| | ||||||    
T  9791706 ttaataaggtctacagtggaccacctacaatatttatccacctaatacatttggggttaatgttaactgacattgatcaaactgactaac 9791795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 1189023 - 1188967
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||| | ||||||||||||||||||||||||||  | |||||| ||||||||    
T  1189023 taaggtctacggtggaccacctacaatgttggttcaccatagacatttagggttaaa 1188967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 26393066 - 26393122
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||| ||||||||||| ||||||||||||||| | |||||| | ||||||    
T  26393066 taaggtctatggtggaccacctataatgttggttcaccttagacatttagtgttaaa 26393122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 43419314 - 43419370
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    |||| |||||| ||||||||||| ||||||||||||||| ||||||||  |||||||    
T  43419314 taagatctatggtggaccacctataatgttggttcaccttatacatttatggttaaa 43419370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 668570 - 668504
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    ||||||||||||||||| ||||| ||||||||||| | || || | | ||||||||||||| |||||    
T  668570 ttaataaggtctatgatagaccatctacaatgttgttccatcttaaatatttggggttaaaattaac 668504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 2162793 - 2162727
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    ||||||||||||||| ||||||||||| |||||||||  |||| | | |||| |||||||| |||||    
T  2162793 ttaataaggtctatggtggaccacctaaaatgttggtcaaccttacatatttagggttaaacttaac 2162727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 10168714 - 10168791
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttgggg-ttaaagttaactgacatggat 299  Q
    |||||||||| || | ||||||| ||| ||||||||| ||||  | |||||||||| ||||||||||||| |||||||    
T  10168714 ttaataaggtgtacggtggaccatctataatgttggtccaccatagacatttgggggttaaagttaactgtcatggat 10168791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 11438500 - 11438565
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaa 288  Q
    |||||| ||| |||| ||||||||||||| ||||||| ||||  | ||||||||||||||| ||||    
T  11438500 ttaatagggtttatggtggaccacctacactgttggtccaccgtagacatttggggttaaacttaa 11438565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 44503615 - 44503671
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||| | ||||||| ||||||||||||||||||  | |||||| ||||||||    
T  44503615 taaggtctacggtggaccatctacaatgttggttcaccatagacatttagggttaaa 44503671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 21507249 - 21507158
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaattaactaacgg 314  Q
    ||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||| ||||||||||| ||| ||||    
T  21507249 ttaataaggtctacgatggaccacctacattgttggtccacctaatacatttggaattaaagttaactgacgtggatcaaattgactgacgg 21507158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 13876484 - 13876563
Alignment:
Q  127 ttatgtgttgatgattcactgtaacatacgatatacctatatgatctagccgtcccctttttgaaaagaaaagatcaaagg 207  Q
    ||||||| |||||||||| ||||||||| ||||||| |||||||| |||||||||| |||||||||||||||| |||||||    
T  13876484 ttatgtgatgatgattcattgtaacatatgatatacttatatgatttagccgtccc-tttttgaaaagaaaaggtcaaagg 13876563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 2628224 - 2628279
Alignment:
Q  250 caatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaatt 305  Q
    |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||    
T  2628224 caatgttggtccacctaatacattttgagttaaagttaactgacatggatcaaatt 2628279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 16757456 - 16757522
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    |||||||||||||||||||||||| || ||||||||| || || | ||||||| |||||||||||||    
T  16757456 ttaataaggtctatgatggaccacttataatgttggtccatcttagacatttgtggttaaagttaac 16757522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 51726779 - 51726839
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||| ||||||||||| || |||||||||||| | ||||||  |||||||    
T  51726779 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaa 51726839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 13876379 - 13876431
Alignment:
Q  12 atcattttaaattttgtttgttgannnnnnngggtttatttgatggaggtgta 64  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||||    
T  13876379 atcattttaaattttgtttgttgatttttctgggtttatttgatggaggtgta 13876431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 21277175 - 21277124
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacattt 274  Q
    ||||||||||||||| ||||||||||| || |||||||||||| | ||||||    
T  21277175 ttaataaggtctatggtggaccacctataaagttggttcaccttagacattt 21277124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 8092779 - 8092737
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacct 265  Q
    ||||||||||||||| ||||||||||| || ||||||||||||    
T  8092779 ttaataaggtctatggtggaccacctataaagttggttcacct 8092737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 51299461 - 51299428
Alignment:
Q  226 ataaggtctatgatggaccacctacaatgttggt 259  Q
    |||||||||||| |||||||||||||||||||||    
T  51299461 ataaggtctatggtggaccacctacaatgttggt 51299428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 44795359 - 44795303
Alignment:
Q  233 ctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    |||| |||||||||||||||||||||| ||||| | |||||||  |||||| |||||    
T  44795359 ctatcatggaccacctacaatgttggtccaccttacacatttgtcgttaaacttaac 44795303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 7312215 - 7312297
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaatt 305  Q
    |||||||| |||| | || |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  7312215 ttaataagatctacggtgaaccacctacaatgttggtccatctaatacatttggggttaaagttaactgacatggatcaaatt 7312297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 303
Target Start/End: Complemental strand, 24757066 - 24756986
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaa 303  Q
    ||||||||||||| | | ||||||||||||||||| | || ||||||| |||| |||||||||||||||||||||||||||    
T  24757066 ttaataaggtctaaggtagaccacctacaatgttgctccatctaatacttttgtggttaaagttaactgacatggatcaaa 24756986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 293575 - 293635
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||| ||||||||||| || |||||||||||| | ||||||  |||||||    
T  293575 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaa 293635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 14328709 - 14328769
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||| ||||||||||| || |||||||||||| | ||||||  |||||||    
T  14328709 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaa 14328769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 14421719 - 14421779
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||| ||||||||||| || |||||||||||| | ||||||  |||||||    
T  14421719 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaa 14421779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 30231662 - 30231596
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    |||| |||||||||| |||||||| ||| |||||||||||||| | |||||||  |||||| |||||    
T  30231662 ttaacaaggtctatggtggaccacttaccatgttggttcaccttagacatttgatgttaaaattaac 30231596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 29677076 - 29677145
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactga 292  Q
    |||||| ||| |||| |||| |||||| ||| ||| | |||||||||||||||| ||||||||| |||||    
T  29677076 ttaatagggtatatggtggatcacctataatattgatccacctaatacatttggagttaaagtttactga 29677145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 20539278 - 20539354
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggat 299  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||| ||| |||||| |||||| ||||| |||| ||||    
T  20539278 ttaataaggtctatgatagaccacctacaatattggtccaccttatatatttggtgttaaacttaacggacacggat 20539354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 12830877 - 12830933
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||| ||||||||||| ||||||||||||||||| | |||| ||||||||    
T  12830877 taaggtctatggtggaccacctataatgttggttcacctaagatatttagggttaaa 12830933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 12862857 - 12862913
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||| ||||||||||| ||||||||||||||||| | |||| ||||||||    
T  12862857 taaggtctatggtggaccacctataatgttggttcacctaagatatttagggttaaa 12862913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 32758009 - 32757943
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    ||||||||||||||| ||||| | |||| |||||||| ||||  | |||||||||||||||||||||    
T  32758009 ttaataaggtctatggtggactatctaccatgttggtccaccatagacatttggggttaaagttaac 32757943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 14210324 - 14210264
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||| |||||||||||||||||| || |||||| |||||||||| | |||| ||||||||    
T  14210324 ttaatgaggtctatgatggaccacttataatgttagttcacctaagatatttagggttaaa 14210264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 15856710 - 15856654
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||| ||||||||||| ||||||||| ||||| | |||||| ||||||||    
T  15856710 taaggtctatggtggaccacctataatgttggtccaccttagacatttagggttaaa 15856654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 9169770 - 9169703
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaact 290  Q
    |||||| |||||||||||||||| ||| ||| ||||| |||   | ||||||||||||||||||||||    
T  9169770 ttaatacggtctatgatggaccatctataatattggtccactatagacatttggggttaaagttaact 9169703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 2167450 - 2167510
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||| ||||||| ||| || |||||||||||| | ||||||  |||||||    
T  2167450 ttaataaggtctatggtggaccatctataaagttggttcaccttagacatttaaggttaaa 2167510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 5383123 - 5383063
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||| ||||||||||| || |||| ||||||| | ||||||  |||||||    
T  5383123 ttaataaggtctatggtggaccacctataaagttgattcaccttagacatttaaggttaaa 5383063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 7354688 - 7354599
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaattaactaac 312  Q
    ||||||||||||| |||||||||| || ||||||||| || || | ||||||| |||||||||||| |||  |||| |||||| ||||||    
T  7354688 ttaataaggtctacgatggaccacttataatgttggtccatcttagacatttgtggttaaagttaattgaagtggaccaaattgactaac 7354599  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 35484249 - 35484305
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    |||| |||||| ||||||||||| ||||||||||||||| | |||||| ||||||||    
T  35484249 taagatctatggtggaccacctataatgttggttcaccttagacatttagggttaaa 35484305  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 8661860 - 8661804
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    |||||| |||| ||||||||||||||| ||| ||||||| | |||||| ||||||||    
T  8661860 taaggtatatggtggaccacctacaattttgattcaccttagacatttagggttaaa 8661804  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 46458648 - 46458708
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||| ||||| ||||| || |||||||||||| | ||||||  |||||||    
T  46458648 ttaataaggtctatggtggactacctataaagttggttcaccttagacatttaaggttaaa 46458708  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 2277401 - 2277477
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggat 299  Q
    ||||||||||||||| ||||| | |||| |||||||| ||||  | ||||||||||||||||||||||  |||||||    
T  2277401 ttaataaggtctatggtggactatctaccatgttggtccaccatagacatttggggttaaagttaactcccatggat 2277477  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 7436649 - 7436581
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactg 291  Q
    ||||||| ||||| ||||||| | ||||||||||||||||||  ||||||||||||||| | |||||||    
T  7436649 ttaataaagtctacgatggactatctacaatgttggttcaccatatacatttggggttagacttaactg 7436581  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 102179 - 102113
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    ||||||||||||||| |||||||||| |||||||  | ||| | | |||||||||||||||||||||    
T  102179 ttaataaggtctatggtggaccacctgcaatgttaatccacattacacatttggggttaaagttaac 102113  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 7753458 - 7753524
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    |||||| |||||||| |||| |||||||||||||| | ||||  |||||||||| ||||||||||||    
T  7753458 ttaatacggtctatggtggatcacctacaatgttgatccaccatatacatttggagttaaagttaac 7753524  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 34147320 - 34147254
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    ||||||||||||||| ||||| | |||| |||||||| ||||  | |||||||||||||||||||||    
T  34147320 ttaataaggtctatggtggactatctaccatgttggtccaccatagacatttggggttaaagttaac 34147254  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 15850598 - 15850654
Alignment:
Q  227 taaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    |||| |||||| ||||||||||| ||||||||||||||| | |||||| ||||||||    
T  15850598 taagatctatggtggaccacctataatgttggttcaccttagacatttagggttaaa 15850654  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 25570805 - 25570856
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacattt 274  Q
    ||||||||||||||| ||||||||||| || |||||||||||| | ||||||    
T  25570805 ttaataaggtctatggtggaccacctataaagttggttcaccttagacattt 25570856  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 21664986 - 21664920
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaac 289  Q
    |||| |||||||||||| ||||||||||||||||||| ||||  | |||||||  |||||| |||||    
T  21664986 ttaacaaggtctatgattgaccacctacaatgttggtccaccatagacatttgaagttaaacttaac 21664920  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 12959640 - 12959701
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaag 284  Q
    ||||||||||||||  ||||||||||| || |||||||||||| | ||||||  ||||||||    
T  12959640 ttaataaggtctattgtggaccacctataaagttggttcaccttagacatttaaggttaaag 12959701  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 10367420 - 10367360
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||  ||||||||||| || |||||||||||| | ||||||  |||||||    
T  10367420 ttaataaggtctattgtggaccacctataaagttggttcaccttagacatttaaggttaaa 10367360  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 14509390 - 14509330
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaa 283  Q
    ||||||||||||||| ||||||||||| || ||||||| |||| | ||||||  |||||||    
T  14509390 ttaataaggtctatggtggaccacctataaagttggtttaccttagacatttaaggttaaa 14509330  T

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Target: scaffold0176 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 16220 - 16143
Alignment:
Q  226 ataaggtctatgatggaccacctacaatgttggttcacctaatacatttggggttaaagttaactgacatggatcaaa 303  Q
    ||||||||||   ||||||||||||| ||||| |  | ||||||| ||| | |||||||||||||||||| |||||||    
T  16220 ataaggtctacagtggaccacctacagtgttgatcaaactaatacgttttgagttaaagttaactgacatagatcaaa 16143  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 22164 - 22123
Alignment:
Q  223 ttaataaggtctatgatggaccacctacaatgttggttcacc 264  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  22164 ttaatagggtctatggtggaccacctacaatgttggtccacc 22123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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