View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_8 (Length: 486)

Name: NF10233A_low_8
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_8
NF10233A_low_8
[»] chr3 (25 HSPs)
chr3 (251-477)||(33399476-33399702)
chr3 (9-168)||(32493567-32493717)
chr3 (82-179)||(33399698-33399795)
chr3 (176-478)||(14399495-14399797)
chr3 (176-477)||(7841834-7842135)
chr3 (176-477)||(46992065-46992366)
chr3 (176-460)||(36816335-36816619)
chr3 (176-477)||(21955057-21955358)
chr3 (176-477)||(48249686-48249987)
chr3 (176-460)||(77839-78123)
chr3 (176-458)||(13746540-13746822)
chr3 (176-460)||(7838554-7838838)
chr3 (176-458)||(9428652-9428934)
chr3 (176-477)||(6504774-6505075)
chr3 (176-458)||(6741847-6742129)
chr3 (176-458)||(3949703-3949985)
chr3 (176-458)||(8159802-8160084)
chr3 (176-458)||(16445580-16445862)
chr3 (207-477)||(29930309-29930579)
chr3 (207-477)||(29979463-29979733)
chr3 (176-458)||(30946461-30946743)
chr3 (212-353)||(4510341-4510482)
chr3 (212-353)||(1275244-1275385)
chr3 (212-408)||(25059796-25059992)
chr3 (315-458)||(50954233-50954376)
[»] chr1 (25 HSPs)
chr1 (167-477)||(26466080-26466390)
chr1 (174-477)||(32106460-32106760)
chr1 (176-477)||(50116582-50116883)
chr1 (167-477)||(16246561-16246871)
chr1 (176-477)||(21943183-21943484)
chr1 (176-477)||(37015855-37016156)
chr1 (176-477)||(38691758-38692059)
chr1 (171-477)||(25231244-25231549)
chr1 (176-477)||(46974105-46974406)
chr1 (178-460)||(51663216-51663498)
chr1 (213-477)||(7980068-7980332)
chr1 (176-407)||(13174792-13175023)
chr1 (176-458)||(29355507-29355789)
chr1 (176-458)||(41454797-41455079)
chr1 (176-369)||(5078984-5079177)
chr1 (176-458)||(20350416-20350698)
chr1 (176-458)||(44619922-44620204)
chr1 (176-458)||(3947280-3947562)
chr1 (176-458)||(3984073-3984355)
chr1 (176-458)||(13630376-13630658)
chr1 (176-458)||(44466542-44466824)
chr1 (176-458)||(38774934-38775216)
chr1 (176-369)||(12649398-12649589)
chr1 (212-408)||(25593678-25593874)
chr1 (273-353)||(39914002-39914082)
[»] chr5 (22 HSPs)
chr5 (175-462)||(20285965-20286252)
chr5 (171-444)||(23028374-23028654)
chr5 (176-460)||(18537155-18537439)
chr5 (176-477)||(25895920-25896221)
chr5 (173-283)||(20287403-20287513)
chr5 (176-369)||(7020699-7020892)
chr5 (176-369)||(34078829-34079022)
chr5 (301-453)||(13157978-13158130)
chr5 (176-477)||(7799825-7800126)
chr5 (176-369)||(27866664-27866857)
chr5 (176-407)||(4202758-4202989)
chr5 (277-477)||(20286449-20286650)
chr5 (176-458)||(11032271-11032553)
chr5 (176-458)||(37819696-37819978)
chr5 (176-458)||(38859009-38859291)
chr5 (176-353)||(28885227-28885404)
chr5 (176-345)||(1036424-1036593)
chr5 (273-477)||(1035466-1035670)
chr5 (260-432)||(13567005-13567177)
chr5 (260-344)||(25048472-25048556)
chr5 (261-313)||(9376677-9376729)
chr5 (176-240)||(13566910-13566974)
[»] chr2 (24 HSPs)
chr2 (168-461)||(17996983-17997276)
chr2 (176-477)||(41007799-41008100)
chr2 (176-437)||(436292-436553)
chr2 (176-477)||(12907311-12907612)
chr2 (176-477)||(11692634-11692934)
chr2 (176-477)||(43949101-43949402)
chr2 (176-369)||(9655205-9655398)
chr2 (176-477)||(24750599-24750900)
chr2 (176-477)||(28354721-28355022)
chr2 (176-369)||(3802385-3802578)
chr2 (176-369)||(27275179-27275372)
chr2 (176-460)||(24604908-24605192)
chr2 (176-369)||(34920601-34920794)
chr2 (176-458)||(212260-212542)
chr2 (176-458)||(10623273-10623555)
chr2 (176-458)||(39794930-39795212)
chr2 (176-369)||(5348216-5348409)
chr2 (176-369)||(41561061-41561254)
chr2 (176-369)||(45476407-45476599)
chr2 (251-458)||(7263992-7264199)
chr2 (176-458)||(38946723-38947005)
chr2 (176-319)||(1098645-1098788)
chr2 (316-477)||(1100042-1100203)
chr2 (387-477)||(34920802-34920892)
[»] chr4 (17 HSPs)
chr4 (171-441)||(6182653-6182925)
chr4 (176-460)||(4976713-4976997)
chr4 (176-407)||(11502517-11502748)
chr4 (176-477)||(18580150-18580448)
chr4 (176-458)||(9890982-9891264)
chr4 (176-361)||(19072476-19072661)
chr4 (190-460)||(4978787-4979057)
chr4 (174-460)||(51643315-51643603)
chr4 (178-369)||(41024248-41024439)
chr4 (176-369)||(3404839-3405032)
chr4 (176-458)||(49565283-49565565)
chr4 (176-370)||(4769178-4769376)
chr4 (176-477)||(21471735-21472035)
chr4 (176-341)||(38463656-38463821)
chr4 (167-292)||(44049736-44049861)
chr4 (385-477)||(17140530-17140622)
chr4 (385-477)||(38463825-38463917)
[»] chr7 (15 HSPs)
chr7 (167-477)||(8400527-8400837)
chr7 (176-477)||(43827425-43827726)
chr7 (183-477)||(47061824-47062118)
chr7 (176-458)||(18106348-18106630)
chr7 (176-369)||(15060662-15060855)
chr7 (176-458)||(617568-617850)
chr7 (176-458)||(42500367-42500649)
chr7 (176-458)||(43622954-43623236)
chr7 (176-458)||(45764339-45764621)
chr7 (176-458)||(30787499-30787781)
chr7 (274-477)||(21799953-21800156)
chr7 (208-344)||(16794464-16794600)
chr7 (212-359)||(3761964-3762111)
chr7 (273-408)||(20908433-20908568)
chr7 (223-353)||(8194146-8194276)
[»] chr8 (15 HSPs)
chr8 (176-460)||(35965564-35965848)
chr8 (182-477)||(7168841-7169136)
chr8 (176-477)||(39751847-39752148)
chr8 (178-477)||(45455317-45455616)
chr8 (176-477)||(43688990-43689291)
chr8 (176-460)||(43370725-43371009)
chr8 (176-458)||(7341039-7341321)
chr8 (176-458)||(8422675-8422957)
chr8 (176-458)||(30304429-30304711)
chr8 (176-458)||(32377727-32378009)
chr8 (176-458)||(32431684-32431966)
chr8 (176-369)||(1115821-1116014)
chr8 (261-477)||(14401676-14401894)
chr8 (273-407)||(22580914-22581048)
chr8 (190-437)||(2145837-2146070)
[»] scaffold0219 (1 HSPs)
scaffold0219 (176-477)||(17010-17311)
[»] chr6 (12 HSPs)
chr6 (176-477)||(18606937-18607238)
chr6 (178-477)||(24220107-24220408)
chr6 (176-407)||(31147333-31147564)
chr6 (180-458)||(28250856-28251134)
chr6 (176-437)||(29287767-29288028)
chr6 (176-458)||(1611570-1611852)
chr6 (251-369)||(21358241-21358359)
chr6 (251-369)||(23962223-23962341)
chr6 (298-460)||(7362137-7362299)
chr6 (293-408)||(34111598-34111713)
chr6 (385-477)||(35243544-35243636)
chr6 (385-458)||(13387722-13387795)
[»] scaffold0116 (1 HSPs)
scaffold0116 (167-477)||(12203-12514)
[»] scaffold0494 (1 HSPs)
scaffold0494 (176-458)||(1841-2123)
[»] scaffold0341 (1 HSPs)
scaffold0341 (176-369)||(16176-16369)
[»] scaffold0101 (1 HSPs)
scaffold0101 (176-458)||(33769-34051)
[»] scaffold0340 (1 HSPs)
scaffold0340 (298-477)||(111-290)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 251 - 477
Target Start/End: Complemental strand, 33399702 - 33399476
Alignment:
Q  251 gtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33399702 gtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacgtacaagcttcttgccatcctcctttaatctacccgc 33399603  T
Q  351 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  33399602 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgcttgcctactaagatatccacga 33399503  T
Q  451 accatgaacatacacctacatattctt 477  Q
    ||||||||||||||||||||| |||||    
T  33399502 accatgaacatacacctacattttctt 33399476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 32493567 - 32493717
Alignment:
Q  9 atcaagctgcaaggcattttaggcaaacaagtcaaaaattagcaacaaattataggaagaatgagaaagaatttatggaagatttgcccgaaaattagct 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  32493567 atcaagctgcaaggcattttaggcaaacaagtcaaaaattagcaccaaattataggaagaatgagaaagaatttatggaagatttgcccgaaacttaggt 32493666  T
Q  109 agtggaaactaatcccactaaagacaccaaatgcatcatctcaataatggcgctttcggc 168  Q
    |||||||||||||||         ||||||||||| ||||||||||||||||||||||||    
T  32493667 agtggaaactaatcc---------caccaaatgcaacatctcaataatggcgctttcggc 32493717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 33399795 - 33399698
Alignment:
Q  82 tatggaagatttgcccgaaaattagctagtggaaactaatcccactaaagacaccaaatgcatcatctcaataatggcgctttcggcaacaccgtctt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33399795 tatggaagatttgcccgaaaattagctagtggaaactaatcccactaaagacaccaaatgcatcatctcaataatggcgctttcggcaacaccgtctt 33399698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 176 - 478
Target Start/End: Complemental strand, 14399797 - 14399495
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  14399797 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 14399698  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| |||||| |||||||||||| ||||| ||||||| |||||||    |     
T  14399697 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcatccttctttaatctaccggcaagaatgtgtccttctaaagccggc 14399598  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||  | ||||||||||||||||| ||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||| ||||| |||| |||    
T  14399597 tccatggcatggttgtgaactccatttagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaaacacccacattttc 14399498  T
Q  476 ttc 478  Q
    |||    
T  14399497 ttc 14399495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 7841834 - 7842135
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| ||||||||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  7841834 tcttgtcacctctatttgccttccatatttgttgatgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 7841933  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||  ||||| ||||||| |||||||    |     
T  7841934 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctacaggcaagaatgtgtccttctaaagccggc 7842033  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  7842034 ttcatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 7842133  T
Q  476 tt 477  Q
    ||    
T  7842134 tt 7842135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 46992065 - 46992366
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| ||||||||| || ||| | || ||||| ||||||||| || |||    
T  46992065 tcttgtcacctctatttgtcttccatatttgttgacgttcattgtacacttgcttcatatttgtcatgcaatgtggtattttgttcttcaaatgtatcaa 46992164  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    || |||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  46992165 aaaatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 46992264  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  46992265 tccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 46992364  T
Q  476 tt 477  Q
    ||    
T  46992365 tt 46992366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 176 - 460
Target Start/End: Original strand, 36816335 - 36816619
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  36816335 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 36816434  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  36816435 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 36816534  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  36816535 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 36816619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 21955057 - 21955358
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  21955057 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 21955156  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||  ||||||| ||||| |    |     
T  21955157 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaataatgtgtccttctagagccggc 21955256  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  21955257 tccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttacttactttgatatccactaatcatgaacaagcacccacattttc 21955356  T
Q  476 tt 477  Q
    ||    
T  21955357 tt 21955358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 48249686 - 48249987
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| | ||||||| || |||    
T  48249686 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgtttttcaaatgtatcaa 48249785  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||  ||||||| | ||||||||||||||||| ||||| ||||||| || ||||    |     
T  48249786 aatatttcttggaagcatcttgctcttggtcaagtcacgtacagtcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttataaagccggc 48249885  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  48249886 tccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 48249985  T
Q  476 tt 477  Q
    ||    
T  48249986 tt 48249987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 176 - 460
Target Start/End: Original strand, 77839 - 78123
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||||||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | || ||||| ||||||||| || |||    
T  77839 tcttgtcacctctatttgcctttcatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtattttgttcttcaaatgtatcaa 77938  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | || |||||||||||||| ||||  ||||||| |||||||    |     
T  77939 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggcaataatgtgtccttctaaagccggc 78038  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
    | ||||   ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  78039 tccatcaaatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 78123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 13746540 - 13746822
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  13746540 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 13746639  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  13746640 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 13746739  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  13746740 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 13746822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 176 - 460
Target Start/End: Complemental strand, 7838838 - 7838554
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||| ||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  7838838 tcttgccacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 7838739  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| |||||||||     |||||||||||||||| ||||| ||||||| | |||||||||| |||||| | ||| ||||||| |||||||    |     
T  7838738 aatatttcttggaagcatattgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggaaagaatgtgtccttctaaagccggc 7838639  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
    | |||| | ||||||||||||||| ||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  7838638 tccatcgcatggttgtgaactccactaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 7838554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 9428652 - 9428934
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  9428652 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 9428751  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  9428752 aatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 9428851  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  9428852 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 9428934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 6504774 - 6505075
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| | || ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  6504774 tcttgtcacctctatgtgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 6504873  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| |||||| || |    ||||||||||||||  ||||| ||||||  | |||||||||| |||||| ||||| ||||||| |||||||    |     
T  6504874 aatatttcttggaaacatcttgttcttggtcaagtcatgtacaatcttcttttcgtcctcctttagtctaccggcaagaatgtgtcattctaaagccggc 6504973  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  6504974 tccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 6505073  T
Q  476 tt 477  Q
    ||    
T  6505074 tt 6505075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 6742129 - 6741847
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||| | || |||    
T  6742129 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaagtgtatcaa 6742030  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  6742029 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 6741930  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  6741929 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 6741847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 3949985 - 3949703
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  3949985 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 3949886  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  3949885 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 3949786  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3949785 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3949703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 8159802 - 8160084
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  8159802 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 8159901  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  8159902 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 8160001  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8160002 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8160084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 16445862 - 16445580
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | ||||||   ||||||||| || |||    
T  16445862 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttgtttcttcaaatgtatcaa 16445763  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| | ||| ||||||| |||||||    |     
T  16445762 aatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggaaagaatgtgtccttctaaagccggc 16445663  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  16445662 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 16445580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 207 - 477
Target Start/End: Complemental strand, 29930579 - 29930309
Alignment:
Q  207 ttgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtc 306  Q
    |||| |||||||||| | || ||| | ||||||| || ||| | |||||||| ||||||||| || |||||||| | ||||||||| |   |||||||||    
T  29930579 ttgacgttcattgtacatttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtc 29930480  T
Q  307 aagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaa 406  Q
    ||||||| ||||| ||||||| | |||||||||||||||||  |||| ||||||| |||||||    |   |||| | ||||||||||||||||||||||    
T  29930479 aagtcacgtacaatcttcttgtcgtcctcctttaatctaccgccaagaatgtgtccttctaaagccggcatcatcgcatggttgtgaactccattaagaa 29930380  T
Q  407 tatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
    | || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  29930379 tgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 29930309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 207 - 477
Target Start/End: Complemental strand, 29979733 - 29979463
Alignment:
Q  207 ttgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtc 306  Q
    |||| |||||||||| | || ||| | ||||||| || ||| | |||||||| ||||||||| || |||||||| | ||||||||| |   |||||||||    
T  29979733 ttgacgttcattgtacatttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtc 29979634  T
Q  307 aagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaa 406  Q
    ||||||| ||||| ||||||| | |||||||||||||||||  |||| ||||||| |||||||    |   |||| | ||||||||||||||||||||||    
T  29979633 aagtcacgtacaatcttcttgtcgtcctcctttaatctaccgccaagaatgtgtccttctaaagccggcatcatcgcatggttgtgaactccattaagaa 29979534  T
Q  407 tatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
    | || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  29979533 tgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 29979463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 30946461 - 30946743
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| ||||  ||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  30946461 tcttgtcacccctatttgccttccatatttgttgactttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 30946560  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||| ||||||| |||||||    |     
T  30946561 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcatcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 30946660  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30946661 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30946743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 353
Target Start/End: Complemental strand, 4510482 - 4510341
Alignment:
Q  212 gttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtc 311  Q
    |||||||||| |||||||||||||||||| |  | | |||||||||  |||||||||||  |||||||||||||||   |||| |||| |||||||||||    
T  4510482 gttcattgtagacttacttgatatttgtcatagactcttgtcttttcttcttcaaatttgtcaaaatattttttggtttcaccgaactattggtcaagtc 4510383  T
Q  312 acatacaagcttcttgccatcctcctttaatctacccgcaag 353  Q
    |  || ||  |||||| | |||||| ||||||| ||||||||    
T  4510382 atgtataattttcttgtcgtcctccattaatcttcccgcaag 4510341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 353
Target Start/End: Original strand, 1275244 - 1275385
Alignment:
Q  212 gttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtc 311  Q
    |||||||||| |||| |||||||||| || || | | |||||||||  |||| ||||||  |||||||||||||||   || | |||| |||||||||||    
T  1275244 gttcattgtagacttgcttgatatttttcatggactcttgtctttttttctttaaatttgtcaaaatattttttggtttcatcgaactattggtcaagtc 1275343  T
Q  312 acatacaagcttcttgccatcctcctttaatctacccgcaag 353  Q
    |  ||||| ||||||| | |||||| ||||||| ||| ||||    
T  1275344 atgtacaatcttcttgtcgtcctccattaatcttcccacaag 1275385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 408
Target Start/End: Original strand, 25059796 - 25059992
Alignment:
Q  212 gttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtc 311  Q
    |||||||||| |||| ||| ||||||||| || | | || | ||||  |||||||||||  ||||||||||||| |     || ||||||||||||||||    
T  25059796 gttcattgtagacttgctttatatttgtcatggactcttttatttttttcttcaaatttgtcaaaatatttttttgttttgccgaactcttggtcaagtc 25059895  T
Q  312 acatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaata 408  Q
    ||||| || || |||| | |||| | |||||||  ||||||| ||||| | | |||||  | || ||||||  ||||||||||| ||||||||||||    
T  25059896 acatataatctccttgtcgtccttcattaatctttccgcaagaatgtgccctgctaaatatggtaacatcttatggttgtgaacaccattaagaata 25059992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 458
Target Start/End: Complemental strand, 50954376 - 50954233
Alignment:
Q  315 tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaat 414  Q
    ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||    
T  50954376 tacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaat 50954277  T
Q  415 ctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | | | || ||||||||| ||||  ||||| ||| || ||||||    
T  50954276 ccccattcctttgtttgcttactttgatatccactaatcatgaa 50954233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 167 - 477
Target Start/End: Original strand, 26466080 - 26466390
Alignment:
Q  167 gcaacaccgtcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaa 266  Q
    |||||||||| || | |||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||| || ||| |||| ||||| |||||||    
T  26466080 gcaacaccgttttttaacctctgtatgacttccatatttattgacgttcattgtatacttgcttgatatttgtcatgcaatcttgttttttgttcttcaa 26466179  T
Q  267 atttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttct 366  Q
    |||||||||||||||| |||||||||||  | ||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||| ||||    
T  26466180 atttaacaaaatatttcttggaagcaccttagtcttggtcaagtcacgtacaatcttcttatcatcctcctttaatctacccgcaagcatgtgtcattct 26466279  T
Q  367 aaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacc 466  Q
    |||    | | |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  26466280 aaagccggctccatctcatggttgtgaactccattaagaatgtttaatctccaatcatttgtttgcctactaagatatccacgaacaatgaacatacacc 26466379  T
Q  467 tacatattctt 477  Q
    ||||| |||||    
T  26466380 tacattttctt 26466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 174 - 477
Target Start/End: Original strand, 32106460 - 32106760
Alignment:
Q  174 cgtcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaac 273  Q
    |||||||||||||||||| ||||| ||||||| |||||||| |||| |||||| |||||||||||||||| ||| |||||||||| ||||||||||||||    
T  32106460 cgtcttgtcacctctgttcgacttccatatttgttgatgttaattgcatacttgcttgatatttgtcttgcaatcttgtcttttgctcttcaaatttaac 32106559  T
Q  274 aaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttc 373  Q
    ||  ||||||||  |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |||| |||||||| ||||||||||     
T  32106560 aac-tattttttcaaagcaccaaactcttggtcaagtcacatacaagctttttgtcattctcctttaatctaccagcaatcatgtgtccttctaaacttg 32106658  T
Q  374 gttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatat 473  Q
    | | |||||| || ||||||||||  ||||||||||| |||||| |||||||||||| ||| ||||||||| |||||||||||||||| |||| |||| |    
T  32106659 gctccatctcatgattgtgaactc--ttaagaatattcaatctccaatcatttgtttaccttctaagatatccacgaaccatgaacattcacccacattt 32106756  T
Q  474 tctt 477  Q
    ||||    
T  32106757 tctt 32106760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 50116582 - 50116883
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  50116582 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 50116681  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| | ||||||||||||||||||  |||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  50116682 aatatttcttggaagcatctaactcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 50116781  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | |||| |||||||||||||||||| || |||||| | || ||| ||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  50116782 tccatcgcatggtagtgaactccattaagaatgttcaatctccattcctttatttgcttactttgatatccactaatcatgaacaagcacccacattttc 50116881  T
Q  476 tt 477  Q
    ||    
T  50116882 tt 50116883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 167 - 477
Target Start/End: Original strand, 16246561 - 16246871
Alignment:
Q  167 gcaacaccgtcttgtcacctctgtttgactttcat---atttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtctt 263  Q
    |||||||||||||||||||||| ||||| ||| |    |||  |||||||| |||| ||| || ||||||||||||  || ||| |||||||||  ||||    
T  16246561 gcaacaccgtcttgtcacctctatttgagtttgacttcattcgttgatgttgattgcataattgcttgatatttgttatgcaatcttgtctttttctctt 16246660  T
Q  264 caaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctt 363  Q
    |||||||||||||||||| || ||| |||||   || ||||| ||||||| ||||| ||||||| ||||||| ||||||||||| | ||||||||||| |    
T  16246661 caaatttaacaaaatattctt-ggatgcaccttgcttttggt-aagtcacgtacaatcttcttgtcatcctcttttaatctaccggtaagcatgtgtcct 16246758  T
Q  364 tctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatac 463  Q
    |||||| |  | | |||| | |||||||||||| |||||| ||| || |||||| | ||||||||||||||||  |||||||||| ||||||||||||||    
T  16246759 tctaaagtcggctccatcgcatggttgtgaacttcattaacaat-ttcaatctccattcatttgtttgcctacacagatattcactaaccatgaacatac 16246857  T
Q  464 acctacatattctt 477  Q
    ||| |||| |||||    
T  16246858 acccacattttctt 16246871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 21943183 - 21943484
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||| ||||| |||| ||| ||||||| |||| ||| |||||| ||||  |||| ||||||| || ||| | |||||||| |||||||||||| |||    
T  21943183 tcttgtcgcctctatttgccttccatatttgttgacgtttattgtacacttgtttgacatttgtcatgcaatgtggtcttttgttcttcaaatttatcaa 21943282  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| | ||| ||||||| ||||||||   |     
T  21943283 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggtaagaatgtgtccttctaaacccggc 21943382  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||| ||||| || |||| | | || ||||||||||||||  ||||| ||| |||||| ||||  |||| |||| |||    
T  21943383 tccatcccatggttgtgaactccattgagaatgttcaatccccattcctttgtttgcctactttgatatccactaaccataaacaagcacccacattttc 21943482  T
Q  476 tt 477  Q
    ||    
T  21943483 tt 21943484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 176 - 477
Target Start/End: Complemental strand, 37016156 - 37015855
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  37016156 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 37016057  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   ||||||||||||||||  |||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  37016056 aatatttcttggaagcatcttgctcttggtcaagtcacgcacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccagc 37015957  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  37015956 tccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 37015857  T
Q  476 tt 477  Q
    ||    
T  37015856 tt 37015855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 38691758 - 38692059
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||| |||| |||| ||| ||||||| ||||||||||||||| |||| ||| | ||||||| || ||| | |||||||| | ||||||| || |||    
T  38691758 tcttgtcatctctatttgccttccatatttgttgatgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttattcaaatgtatcaa 38691857  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| ||||| | ||||| ||||||| |  |     
T  38691858 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggcaagaacgtgtccttctaaagtcggc 38691957  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||| ||||| |||| |||    
T  38691958 tccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaaacacccacattttc 38692057  T
Q  476 tt 477  Q
    ||    
T  38692058 tt 38692059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 171 - 477
Target Start/End: Complemental strand, 25231549 - 25231244
Alignment:
Q  171 caccgtcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaattt 270  Q
    ||||||| ||| |||||||||||||||  ||| || ||   |||  |||||||||| ||||||||||||| || | | || ||||||  | |||||||||    
T  25231549 caccgtcatgttacctctgtttgacttgaataattttttccgttagttgtatacttgcttgatatttgtcatgcactcttatctttttcttttcaaattt 25231450  T
Q  271 aacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaac 370  Q
    |||||||||||| ||  |||||||||||  ||||||||||||| ||||| |||||||  ||||||| || ||||||| ||||||||||||| ||| ||||    
T  25231449 aacaaaatatttgttaaaagcaccaaacatttggtcaagtcacgtacaatcttcttggtatcctcccttgatctacctgcaagcatgtgtccttccaaac 25231350  T
Q  371 ttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctaca 470  Q
    || | | | ||||  |||||||||||||||| | |||||| |||||| | |||||||||| |||||||| |||| || |||  ||| ||||||||| |||    
T  25231349 ttggcttcgtctcacggttgtgaactccattgaaaatattcaatctccagtcatttgtttccctactaatatatccaggaagaatg-acatacacccaca 25231251  T
Q  471 tattctt 477  Q
    | |||||    
T  25231250 ttttctt 25231244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 176 - 477
Target Start/End: Complemental strand, 46974406 - 46974105
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||| | |||| ||| ||||||| |||| |||||||||| ||||  || | ||||||| || ||| | |||||||| |||| |||| || |||    
T  46974406 tcttgtcacctttatttgccttccatatttgttgacgttcattgtacacttgtttcacatttgtcatgcaatgtggtcttttgttctttaaatgtatcaa 46974307  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| ||||| ||||||| ||||||| |  |     
T  46974306 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatgtaccggcaagaatgtgtccttctaaagtcggc 46974207  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||| ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||| ||||| |||| |||    
T  46974206 tccatcgcatggttgtaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaaacacccacattttc 46974107  T
Q  476 tt 477  Q
    ||    
T  46974106 tt 46974105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 178 - 460
Target Start/End: Complemental strand, 51663498 - 51663216
Alignment:
Q  178 ttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaa 277  Q
    ||||||||||| |||| ||| ||| ||| |||| ||||| |||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||||    
T  51663498 ttgtcacctctatttgccttccatttttgttgacgttcaatgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaaaa 51663399  T
Q  278 tattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgtta 377  Q
    ||||| ||||||||| |   |||||||||||||| | ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    | |     
T  51663398 tatttcttggaagcatcttgctcttggtcaagtcgcgtacaatcttcttgtcctcctcctttaatctaccagcaagaatgtgtcattctaaagccggctt 51663299  T
Q  378 catctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
    |||| | ||||||||| ||||||||||||| || |||| | | || ||||||||| ||||  ||||||||| || ||||||||    
T  51663298 catcgcatggttgtgagctccattaagaatgttcaatccccattcttttgtttgcttactttgatattcactaatcatgaaca 51663216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 213 - 477
Target Start/End: Original strand, 7980068 - 7980332
Alignment:
Q  213 ttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtca 312  Q
    ||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||||||||| ||||||||| |   |||||||||||||||    
T  7980068 ttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtca 7980167  T
Q  313 catacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatattta 412  Q
    | ||||| ||||||| ||||||||||||||||||| ||||| ||||||| |||||||      | |||  | ||||||||||||||||||||||| || |    
T  7980168 cgtacaatcttcttgtcatcctcctttaatctaccggcaagaatgtgtccttctaaagccgactgcattgcatggttgtgaactccattaagaatgttca 7980267  T
Q  413 atctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
    ||| | | || ||||||||| ||||  ||||| ||| || |||||||| ||||| |||| |||||    
T  7980268 atccccattcctttgtttgcttactttgatatccactaatcatgaacaaacacccacattttctt 7980332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 176 - 407
Target Start/End: Complemental strand, 13175023 - 13174792
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| ||||| ||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  13175023 tcttgtcacctctatttgccttccatatttgttgattttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 13174924  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   ||||||||||||||||  |||| ||||||| | ||||||||||||||||| || || ||||||| | |||||    |     
T  13174923 aatatttattggaagcatcttgctcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccagcgagaatgtgtcctcctaaagccggc 13174824  T
Q  376 tacatctcttggttgtgaactccattaagaat 407  Q
    | |||| | |||||||||||||||||||||||    
T  13174823 tccatcgcatggttgtgaactccattaagaat 13174792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 29355507 - 29355789
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  29355507 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 29355606  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  29355607 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 29355706  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  29355707 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 29355789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 41455079 - 41454797
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  41455079 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 41454980  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  41454979 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 41454880  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  41454879 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 41454797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 369
Target Start/End: Complemental strand, 5079177 - 5078984
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || | || ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| ||  ||    
T  5079177 tcttgtcacccctatctgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtattaa 5079078  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||| ||||||| |||||||    
T  5079077 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgccgtcctcctttaatctaccggcaagaatgtgtccttctaaa 5078984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 20350698 - 20350416
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  20350698 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 20350599  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  20350598 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 20350499  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  20350498 tccatgggatggttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 20350416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 44619922 - 44620204
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||| | |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  44619922 tcttgtcacccctatttgccttccatatttgttgacgttcattgcacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 44620021  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  44620022 aatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 44620121  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  44620122 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 44620204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 3947280 - 3947562
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  3947280 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 3947379  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  3947380 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 3947479  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3947480 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3947562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 3984355 - 3984073
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  3984355 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 3984256  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  3984255 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 3984156  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3984155 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3984073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 13630658 - 13630376
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | ||||||   ||||||||| || |||    
T  13630658 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttgtttcttcaaatgtatcaa 13630559  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| | ||| ||||||| |||||||    |     
T  13630558 aatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggaaagaatgtgtccttctaaagccggc 13630459  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  13630458 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 13630376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 44466824 - 44466542
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  44466824 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 44466725  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  44466724 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 44466625  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  44466624 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 44466542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 38774934 - 38775216
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||  | |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  38774934 tcttgtcacccatatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 38775033  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  38775034 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 38775133  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38775134 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38775216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 369
Target Start/End: Original strand, 12649398 - 12649589
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||  | ||||||| || |||    
T  12649398 tcttgtcacctctatttgtcttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttatttttcaaatgtatcaa 12649497  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | | |||  ||||| |||| ||||| ||||||| |||||||    
T  12649498 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtgctc--ttaatttaccggcaagaatgtgtccttctaaa 12649589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 408
Target Start/End: Complemental strand, 25593874 - 25593678
Alignment:
Q  212 gttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtc 311  Q
    |||||||||| ||||  |||||||||||| || | | |||||||||  |||||||||||  |||||||||||||||    ||| |||| |||||||||||    
T  25593874 gttcattgtagacttgtttgatatttgtcatggactcttgtcttttcttcttcaaatttgtcaaaatattttttggttttaccgaactattggtcaagtc 25593775  T
Q  312 acatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaata 408  Q
    |||||||| |  |||| | |||||| ||||| | |||||||| | ||| | | |||||  | |  ||||||  ||||||||||| ||||||||||||    
T  25593774 acatacaatcgccttgtcgtcctccattaatattcccgcaagaaggtgccctgctaaatatggcaacatcttatggttgtgaacaccattaagaata 25593678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 39914082 - 39914002
Alignment:
Q  273 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 353  Q
    ||||||||||||| |  |||||||||||||||||||||||| ||||| ||||||| |||||| | ||||||| | ||||||    
T  39914082 caaaatatttttttgttgcaccaaactcttggtcaagtcacgtacaatcttcttgtcatccttcattaatcttctcgcaag 39914002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 175 - 462
Target Start/End: Complemental strand, 20286252 - 20285965
Alignment:
Q  175 gtcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaaca 274  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| || ||| |||||||||| |||||||||||||||    
T  20286252 gtcttgtcacctctgtttgacttccatatttgttgatgttcattgtatacttgcttgatatttgtcatgcaatcttgtcttttgctcttcaaatttaaca 20286153  T
Q  275 aaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcg 374  Q
    |||||||| |||||||||||  ||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||    |    
T  20286152 aaatatttcttggaagcaccttactcttggttaagtcacatacaatcttcttgtcatcctcctttaatctacccgcaagcatgtgtccttctaaagccgg 20286053  T
Q  375 ttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacata 462  Q
     | |||| | ||||||||||||||||||||||| || | | || | |||||||||||||||||||||||| |||  ||||||||||||    
T  20286052 ctccatcacatggttgtgaactccattaagaatgttcagtttccattcatttgtttgcctactaagatatccacttaccatgaacata 20285965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 171 - 444
Target Start/End: Original strand, 23028374 - 23028654
Alignment:
Q  171 caccgtcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaattt 270  Q
    |||||| ||||||||||||||||||||  |||||| || | ||||||||||||||| | ||||||||||| || | | || ||||||  |||||||||||    
T  23028374 caccgttttgtcacctctgtttgacttgaatatttttttacgttcattgtatacttgcatgatatttgtcatgcactcttttctttttctcttcaaattt 23028473  T
Q  271 aacaaaatattttttggaagcaccaaactcttggtcaagtcaca-------tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctt 363  Q
    || ||||||||||||| ||||| ||||||||||||||||||||        ||||| ||||||| |||||||| |||||||||||||||||||||||  |    
T  23028474 aataaaatattttttgaaagcatcaaactcttggtcaagtcaccaatcatgtacaatcttcttgtcatcctcccttaatctacccgcaagcatgtgttct 23028573  T
Q  364 tctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatat 444  Q
    |||||||||   | |||||| ||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||    
T  23028574 tctaaacttgccttcatctcatggttgtgaactccattaataatattcaatctccaatcatttgtttccctactaagatat 23028654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 176 - 460
Target Start/End: Original strand, 18537155 - 18537439
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  18537155 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 18537254  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |  ||||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||  | |     
T  18537255 aatatttcttggaagcatctcactcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagctggc 18537354  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
    |  ||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| || ||||||||    
T  18537355 tcaatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgttttcttactttgatatccactaatcatgaaca 18537439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 25895920 - 25896221
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| | ||||||| || |||    
T  25895920 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgtttttcaaatgtatcaa 25896019  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  25896020 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 25896119  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  25896120 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 25896219  T
Q  476 tt 477  Q
    ||    
T  25896220 tt 25896221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 173 - 283
Target Start/End: Complemental strand, 20287513 - 20287403
Alignment:
Q  173 ccgtcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaa 272  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |  ||| |||||||||| |||||||||||||    
T  20287513 ccgtcttgtcacctctgtttgactttcatatttattgacgttcattatatacttgcttgatatttgtcatacaatcttgtcttttgctcttcaaatttaa 20287414  T
Q  273 caaaatatttt 283  Q
    |||||||||||    
T  20287413 caaaatatttt 20287403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 176 - 369
Target Start/End: Original strand, 7020699 - 7020892
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  7020699 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 7020798  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  7020799 aatatttcttggaagcatcttcctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 7020892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 176 - 369
Target Start/End: Complemental strand, 34079022 - 34078829
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  34079022 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 34078923  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  34078922 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 34078829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 301 - 453
Target Start/End: Original strand, 13157978 - 13158130
Alignment:
Q  301 ttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccat 400  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| || |||| ||   | ||| || ||||||||||||||||    
T  13157978 ttggtgaagtcacatacaagtttcttgtcatcctcctttaatctacccgcaagcatgcgtccttttaaatttgactccatttcatggttgtgaactccat 13158077  T
Q  401 taagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaacc 453  Q
    ||||||| || |||||| |||||||||||||| || |||||||| ||||||||    
T  13158078 taagaatgttcaatctccaatcatttgtttgcttattaagatatccacgaacc 13158130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 7799825 - 7800126
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||  ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| | ||||||| || |||    
T  7799825 tcttgtcacctctattttccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgtttttcaaatgtatcaa 7799924  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| ||||||  |||| ||||||| |||||||    |     
T  7799925 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccgacaagaatgtgtccttctaaagccggc 7800024  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || |||  | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  7800025 tccatcgcatggttgtgaactccattaagaatgttcaattcccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 7800124  T
Q  476 tt 477  Q
    ||    
T  7800125 tt 7800126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 176 - 369
Target Start/End: Original strand, 27866664 - 27866857
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||  ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  27866664 tcttgtcacctctattttccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 27866763  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  27866764 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 27866857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 176 - 407
Target Start/End: Original strand, 4202758 - 4202989
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | |||| || || ||| | |||||||| ||||||||| || |||    
T  4202758 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttatcatgcaatgtggtcttttgttcttcaaatgtatcaa 4202857  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||  ||||||||| |   |||||| ||||||||| ||||| ||||||| | ||||||||||||||||| |||||  |||||| |||||||    |     
T  4202858 aatattacttggaagcatcttgctcttgatcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagagtgtgtccttctaaagccggc 4202957  T
Q  376 tacatctcttggttgtgaactccattaagaat 407  Q
    | |||| | |||||||||||||||||||||||    
T  4202958 tccatcgcatggttgtgaactccattaagaat 4202989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 477
Target Start/End: Complemental strand, 20286650 - 20286449
Alignment:
Q  277 atattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgtt 376  Q
    |||||| ||||| |||||  ||||||||||||||||  ||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||||    | |    
T  20286650 atatttcttggatgcaccttactcttggtcaagtcatgtacaatctttttgtcatcctcctttaatctacccgcaagcatgtgtccttctaaagccggct 20286551  T
Q  377 acatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac-gaaccatgaacatacacctacatattc 475  Q
     |||| | ||||||| ||||||||||||||| || |   || | |||||||||||||||||||||||| |||  | ||||||||||||||| |||| |||    
T  20286550 ccatcacatggttgtaaactccattaagaatgttcaggttccattcatttgtttgcctactaagatatccacttacccatgaacatacacccacattttc 20286451  T
Q  476 tt 477  Q
    ||    
T  20286450 tt 20286449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 11032271 - 11032553
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  11032271 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 11032370  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   || || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  11032371 aatatttcttggaagcatcttgctttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcattctaaagccggc 11032470  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  11032471 tccatgggatggttgtgaactccattaagaatgttcaatccccattcttttgtttgcttactttgatatccactaatcatgaa 11032553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 37819696 - 37819978
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  37819696 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 37819795  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||  ||||||| |||||||    |     
T  37819796 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaacaatgtgtccttctaaagccggc 37819895  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  37819896 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 37819978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 38859009 - 38859291
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  38859009 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 38859108  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |    | || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  38859109 aatatttcttggaagcatcttgttttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 38859208  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  38859209 tccatgggatggttgtgaactccattaagaatgttcaatctccattcttttgtttgcttactttgatatccactaatcatgaa 38859291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 28885227 - 28885404
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  28885227 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 28885326  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 353  Q
    ||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| |||||    
T  28885327 aatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaag 28885404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 176 - 345
Target Start/End: Complemental strand, 1036593 - 1036424
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||  ||| ||||||| |||| |||||||||| ||||   | | ||||||| || ||| | |||||||| ||||||||| || |||    
T  1036593 tcttgtcacctctattttccttccatatttgttgacgttcattgtacacttgtgtcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 1036494  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatcta 345  Q
    ||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | |||||||||||||||    
T  1036493 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatcta 1036424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 477
Target Start/End: Original strand, 1035466 - 1035670
Alignment:
Q  273 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 372  Q
    |||||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  1035466 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 1035565  T
Q  373 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacata 472  Q
     | | |||  | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| ||||     
T  1035566 ggctccatggcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacatt 1035665  T
Q  473 ttctt 477  Q
    |||||    
T  1035666 ttctt 1035670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 432
Target Start/End: Original strand, 13567005 - 13567177
Alignment:
Q  260 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 359  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||| |||||||||||| ||||| |||||    
T  13567005 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtccttctttaatctaccggcaagaatgtg 13567104  T
Q  360 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgc 432  Q
    || |||||||  | | | |||    ||||||||||||||||||||||| || |||| | | || |||||||||    
T  13567105 tccttctaaagctggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgc 13567177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 25048556 - 25048472
Alignment:
Q  260 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatct 344  Q
    |||||||||||| ||||||||||| |||   || | |||| |||||||||||| |||||| ||||||| | |||||| |||||||    
T  25048556 tcttcaaatttatcaaaatattttatggtttcaacgaactattggtcaagtcatatacaatcttcttgtcgtcctccattaatct 25048472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 9376677 - 9376729
Alignment:
Q  261 cttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcac 313  Q
    ||||||||| | ||||||||| || ||  ||||||||||||||||||||||||    
T  9376677 cttcaaattcatcaaaatattcttaggtggcaccaaactcttggtcaagtcac 9376729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 13566910 - 13566974
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtc 240  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | |||||||    
T  13566910 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtc 13566974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 9e-65; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 168 - 461
Target Start/End: Original strand, 17996983 - 17997276
Alignment:
Q  168 caacaccgtcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaa 267  Q
    ||||| ||||||||||||||| |||||||| ||||||| |||| ||||||||||||||| ||||||||||| | || ||| |||||||||| ||||||||    
T  17996983 caacatcgtcttgtcacctctatttgacttccatatttgttgacgttcattgtatacttgcttgatatttggcatgcaatgttgtcttttgctcttcaaa 17997082  T
Q  268 tttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttcta 367  Q
    |||| |||||||||| |||||||||||   |||||||||||||||| ||||| ||||||  ||||||||||||||||||| ||||||||||||| |||||    
T  17997083 tttatcaaaatatttcttggaagcaccttgctcttggtcaagtcacgtacaatcttcttatcatcctcctttaatctaccagcaagcatgtgtccttcta 17997182  T
Q  368 aacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 461  Q
    ||    | | |||| | |||||| ||||| ||| |||||| || |||||| | || |||||||| |||||||||||| ||| |||| |||||||    
T  17997183 aagccggctccatcgcatggttgcgaacttcatgaagaatgttcaatctccattcctttgtttgtctactaagatatccactaaccttgaacat 17997276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 41007799 - 41008100
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| ||||||| || |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  41007799 tcttgtcacctctatttgccttacatatttgttgacgttcattttagacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 41007898  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  41007899 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcattctaaagccggc 41007998  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    |||||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  41007999 tacatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 41008098  T
Q  476 tt 477  Q
    ||    
T  41008099 tt 41008100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 176 - 437
Target Start/End: Complemental strand, 436553 - 436292
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| | || ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  436553 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacaattgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 436454  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  436453 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 436354  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 437  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||    
T  436353 tccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttact 436292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 12907311 - 12907612
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| ||||  ||||||||| |||| ||| | ||||||| || ||| | |||||||| | ||||||| || ||     
T  12907311 tcttgtcacctctatttgccttccatatttgttgactttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttattcaaatgtatcag 12907410  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  12907411 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 12907510  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  12907511 tccatcgcatggttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 12907610  T
Q  476 tt 477  Q
    ||    
T  12907611 tt 12907612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 11692634 - 11692934
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||| |||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  11692634 tcttgtcaactctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttg-tcttcaaatgtatcaa 11692732  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| ||||||| |  |     
T  11692733 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagtcggc 11692832  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    |  ||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  11692833 tcgatcacatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 11692932  T
Q  476 tt 477  Q
    ||    
T  11692933 tt 11692934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 43949101 - 43949402
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||| | |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  43949101 tcttgtcacctatatttgtcttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 43949200  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||  ||||| ||||||||| ||||||||||||||||| ||||| ||||||| |||||||    |     
T  43949201 aatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgccgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 43949300  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | | || | ||||||||||||||||||| ||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  43949301 tccttcgcatggttgtgaactccattaataatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 43949400  T
Q  476 tt 477  Q
    ||    
T  43949401 tt 43949402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 176 - 369
Target Start/End: Complemental strand, 9655398 - 9655205
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| ||||||||||||||| |||||||| | |||| || || ||| | |||||||| ||||||||| || |||    
T  9655398 tcttgtcacctctatttgccttccatatttgttgatgttcattgtacacttacttcacatttttcatgcaatgtggtcttttgttcttcaaatgtatcaa 9655299  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||| ||||||| ||||| ||||||| | |||||||||| |||||| ||||| ||||||| |||||||    
T  9655298 aatatttcttggaagcatcttgctcttggttaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtccttctaaa 9655205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 176 - 477
Target Start/End: Complemental strand, 24750900 - 24750599
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  24750900 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 24750801  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||| |||||| |||  ||||| ||||||| ||||||||||||||||||| ||||| ||||||| |||||||    |     
T  24750800 aatatttcttggaagcatcttgctctcggtcaattcatgtacaatcttcttgtcatcctcctttaatctaccggcaagaatgtgtccttctaaatccggc 24750701  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  24750700 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 24750601  T
Q  476 tt 477  Q
    ||    
T  24750600 tt 24750599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 28354721 - 28355022
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||| | |||||||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||  ||||||||| || |||    
T  28354721 tcttgtcacctatatttgacttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgaaatgtggtcttttattcttcaaatgtatcaa 28354820  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   ||| |||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| ||||||| |||||||    |     
T  28354821 aatatttcttggaagcatcttgctcatggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccagcaagaatgtgtcattctaaagcaggc 28354920  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||| ||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  28354921 tccatcgcatggttatgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 28355020  T
Q  476 tt 477  Q
    ||    
T  28355021 tt 28355022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 176 - 369
Target Start/End: Original strand, 3802385 - 3802578
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  3802385 tcttgtcacccctatttgccttccatatttgttgaagttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 3802484  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  3802485 aatatttattggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 3802578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 176 - 369
Target Start/End: Original strand, 27275179 - 27275372
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  27275179 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 27275278  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  27275279 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 27275372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 176 - 460
Target Start/End: Original strand, 24604908 - 24605192
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| | ||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  24604908 tcttgtcacctctatttgtcttccctatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 24605007  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | |||||||||| ||||||  |||| ||||||  |||||||    |     
T  24605008 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaattttcttgtcgtcctcctttagtctaccgacaagaatgtgtacttctaaagccggc 24605107  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  24605108 tccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 24605192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 369
Target Start/End: Original strand, 34920601 - 34920794
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| ||||  ||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  34920601 tcttgtcacctctatttgccttccatatttgttgaatttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 34920700  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| | ||| ||||||| |||||||    
T  34920701 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggtaagaatgtgtccttctaaa 34920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 212260 - 212542
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  212260 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 212359  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  212360 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 212459  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  212460 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 212542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 10623273 - 10623555
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  10623273 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 10623372  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  10623373 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 10623472  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  10623473 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 10623555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 39795212 - 39794930
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  39795212 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 39795113  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   || || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||| | |||||||    |     
T  39795112 aatatttcttggaagcatcttgctttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgcccttctaaagccggc 39795013  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  39795012 tccatgggatggttgtgaactccattaagaatgttcaatccccattcttttgtttgcttactttgatatccactaatcatgaa 39794930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 369
Target Start/End: Complemental strand, 5348409 - 5348216
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  5348409 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 5348310  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  5348309 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 5348216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 369
Target Start/End: Complemental strand, 41561254 - 41561061
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  41561254 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 41561155  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  41561154 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 41561061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 369
Target Start/End: Complemental strand, 45476599 - 45476407
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||  |||| |||||||||| |||| ||| | ||||||| || ||| | || ||||| ||||||||  || |||    
T  45476599 tcttgtcacctctatttgccttccatattg-ttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtattttgttcttcaaacgtatcaa 45476501  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||| ||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  45476500 aatatttcttgtaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 45476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 251 - 458
Target Start/End: Complemental strand, 7264199 - 7263992
Alignment:
Q  251 gtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 350  Q
    |||||| | ||||||||| || |||||||||| |||||| || |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||    
T  7264199 gtctttggttcttcaaatgtatcaaaatatttcttggaaccatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 7264100  T
Q  351 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 450  Q
    ||| ||||||| |||||||    ||| |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  7264099 aagaatgtgtccttctaaagccggttccatgagatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 7264000  T
Q  451 accatgaa 458  Q
    | ||||||    
T  7263999 atcatgaa 7263992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 38947005 - 38946723
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  38947005 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgaaatgtggtctctagttcttcaagtgtatcaa 38946906  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    |||||||  |||||||| |   |||||||||||||||| ||| | |||||||   ||||||||||||||||| ||||| ||||||| |||||||    |     
T  38946905 aatatttcatggaagcatcttgctcttggtcaagtcacgtacgatcttcttgttgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 38946806  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38946805 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38946723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 319
Target Start/End: Original strand, 1098645 - 1098788
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  1098645 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 1098744  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaa 319  Q
    ||||||| ||||||||| |   |||| ||||||||||| |||||    
T  1098745 aatatttcttggaagcatcttgctctcggtcaagtcacgtacaa 1098788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 477
Target Start/End: Original strand, 1100042 - 1100203
Alignment:
Q  316 acaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatc 415  Q
    |||| ||||||| | ||||||||||||||| | ||||| |||||||  ||||||    | | |||| | ||||||||||||||||||||||| || ||||    
T  1100042 acaatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtccatctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatc 1100141  T
Q  416 tcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
     | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  1100142 cccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 1100203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 477
Target Start/End: Original strand, 34920802 - 34920892
Alignment:
Q  387 gttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
    ||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  34920802 gttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 34920892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 171 - 441
Target Start/End: Complemental strand, 6182925 - 6182653
Alignment:
Q  171 caccgtcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttactt--gatatttgtcttgtaattttgtcttttggtcttcaaat 268  Q
    |||||||||||||||||||||||||||  |||||| ||||||||||||||||| ||  ||  ||| |||||| || | | |||||||||  |||| ||||    
T  6182925 caccgtcttgtcacctctgtttgacttgaatattttttgatgttcattgtatatttgtttttgatgtttgtcatgcactcttgtctttttctcttaaaat 6182826  T
Q  269 ttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaa 368  Q
    |||||||||||||||||| |||||||||||||||||||||||||  |||||  |||||| || | ||| ||||| |||  |||||||| |||| ||||||    
T  6182825 ttaacaaaatattttttgaaagcaccaaactcttggtcaagtcatgtacaattttcttgtcaccatcccttaatatacttgcaagcatatgtccttctaa 6182726  T
Q  369 acttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaaga 441  Q
    |||| | | |||||| |||||||||||||||| ||||||||| |||||| |||| ||||||| ||||||||||    
T  6182725 acttggcttcatctcatggttgtgaactccatcaagaatattcaatctccaatcgtttgtttccctactaaga 6182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 176 - 460
Target Start/End: Complemental strand, 4976997 - 4976713
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| ||||  || ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  4976997 tcttgtcacctctatttgcattccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 4976898  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||||||||||||    |     
T  4976897 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtctttctaaagccggc 4976798  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
    | |||| | ||||||  ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  4976797 tccatcgcatggttgcaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 4976713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 176 - 407
Target Start/End: Complemental strand, 11502748 - 11502517
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| ||||||||| ||||| ||| | |||| || || ||| | |||||||| ||||||||| || |||    
T  11502748 tcttgtcacctctatttgtcttccatatttgttgacgttcattgtttacttgcttcacatttatcatgcaatgtggtcttttgttcttcaaatgtatcaa 11502649  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | || |||||||||||||| ||| | ||||||| |||||||    |     
T  11502648 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggcatgaatgtgtccttctaaagccggc 11502549  T
Q  376 tacatctcttggttgtgaactccattaagaat 407  Q
    | |||| | ||| |||||||||||||||||||    
T  11502548 tccatcgcatgggtgtgaactccattaagaat 11502517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 18580150 - 18580448
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| |   ||||||| |||| |||||||||| |||| ||| | ||||||| || |||   |||||| | ||||||||| || |||    
T  18580150 tcttgtcacctctatttgtc---catatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgaggtctttagttcttcaaatgtatcaa 18580246  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||||||||| ||||||| | ||||||||||||||| | ||||| ||||||| |||||||    |     
T  18580247 aatatttcttggaagcatcttgctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtcattctaaagccggc 18580346  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||  | ||||||||||||||||||||||| |||||||   | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  18580347 ttcattgcatggttgtgaactccattaagaatgtttaatcctcattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 18580446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 9891264 - 9890982
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  9891264 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 9891165  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  9891164 aatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 9891065  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  9891064 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 9890982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 361
Target Start/End: Original strand, 19072476 - 19072661
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| | ||||||| || |||    
T  19072476 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgtttttcaaatgtatcaa 19072575  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 361  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||    
T  19072576 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 19072661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 460
Target Start/End: Original strand, 4978787 - 4979057
Alignment:
Q  190 tttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaa 289  Q
    |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||||||||| ||||||    
T  4978787 tttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaaaatatttcttggaa 4978886  T
Q  290 gcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggtt 389  Q
    ||| |   |||||||||||||||| ||||| ||||||| | || ||||||| ||| |  ||||| ||||||| ||||||| |  | | |||| | |||||    
T  4978887 gcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcatcctttagtctgctggcaagaatgtgtccttctaaagtcggctccatcgcatggtt 4978986  T
Q  390 gtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
    | |||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  4978987 gggaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 4979057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 174 - 460
Target Start/End: Original strand, 51643315 - 51643603
Alignment:
Q  174 cgtcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaac 273  Q
    |||||||||| |||| |||| ||| ||||||| |||| |||||| ||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |    
T  51643315 cgtcttgtcaactctatttgccttccatatttgttgacgttcatcgtacacttgctttacatttgtcatgcaatgtggtcttttgttcttcaaatgtatc 51643414  T
Q  274 aaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa-ctt 372  Q
    ||||||||||||| |||||     |||||||||||||||| ||||| ||||||| | ||||||||||||||||  ||||| ||||||| || |||| |      
T  51643415 aaaatattttttgaaagcattttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctactggcaagaatgtgtccttataaagccg 51643514  T
Q  373 cgttacatctcttggttgtg-aactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
     | | |||| | || ||||| ||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||    
T  51643515 ggctccatcgcatgtttgtgaaactccattaagaatgttcaatctcaattcctttgtttgcttactttgatatccactaatcatgaaca 51643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 178 - 369
Target Start/End: Complemental strand, 41024439 - 41024248
Alignment:
Q  178 ttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaa 277  Q
    |||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||||    
T  41024439 ttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaaaa 41024340  T
Q  278 tattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||| ||||||||| |   ||||| |||||||||| ||||| ||||||  | ||||||||||||||||| ||||| ||||||| |||||||    
T  41024339 tatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttttcgtcctcctttaatctacctgcaagaatgtgtccttctaaa 41024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 369
Target Start/End: Complemental strand, 3405032 - 3404839
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | |||| || || ||| | |||||| | ||||||||| || |||    
T  3405032 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttatcatgcaatgtggtctttggttcttcaaatgtatcaa 3404933  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||  ||||| ||||||| |||||||    
T  3404932 aatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctactggcaagaatgtgtccttctaaa 3404839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 49565283 - 49565565
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  49565283 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 49565382  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||| | ||||| ||||||| |||||||    |     
T  49565383 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtccttctaaagccggc 49565482  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  49565483 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 49565565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 370
Target Start/End: Complemental strand, 4769376 - 4769178
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaat----tta 271  Q
    ||||||||||||| |||| ||| ||||||| | ||  ||||||||| |||| ||| | ||||||| || ||| | |||||||| |||||||||    |||    
T  4769376 tcttgtcacctctatttgccttccatatttgtagacattcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatcaattta 4769277  T
Q  272 acaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaac 370  Q
     |||||||||| ||| ||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| | ||| ||||||| ||||||||    
T  4769276 tcaaaatatttcttgaaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggtaagaatgtgtccttctaaac 4769178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 477
Target Start/End: Complemental strand, 21472035 - 21471735
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | |||| | |   ||| | |||||||| || |||||| || |||    
T  21472035 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttttatcc-aatgtggtcttttgttcatcaaatgtatcaa 21471937  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||| |  |||| |||||||||| |||| ||       
T  21471936 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttattctatcttcaagaatgtgtctttttaaagttgtc 21471837  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  21471836 tccattgtatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 21471737  T
Q  476 tt 477  Q
    ||    
T  21471736 tt 21471735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 176 - 341
Target Start/End: Original strand, 38463656 - 38463821
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| | ||||| |||| |||||||||| |||| ||| | ||||||| || | | | ||||||||  |||||||| || |||    
T  38463656 tcttgtcacctctatttgccttccgtatttgttgacgttcattgtacacttgcttcacatttgtcatgcagtgtggtcttttgtccttcaaatgtatcaa 38463755  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaa 341  Q
    ||||||||||||||||| |   |||||||||||||||| | ||| ||||||| | |||||||||||    
T  38463756 aatattttttggaagcatcttgctcttggtcaagtcacgtgcaatcttcttgtcgtcctcctttaa 38463821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 167 - 292
Target Start/End: Complemental strand, 44049861 - 44049736
Alignment:
Q  167 gcaacaccgtcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaa 266  Q
    |||||| | ||||||||||||| |||| ||| ||||||| |||| |||| ||||| |||| ||| | ||||||| || ||| | |||||||| |||||||    
T  44049861 gcaacagcttcttgtcacctctatttgccttccatatttgttgacgttcgttgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaa 44049762  T
Q  267 atttaacaaaatattttttggaagca 292  Q
    || || |||||||||| |||||||||    
T  44049761 atgtatcaaaatatttcttggaagca 44049736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 477
Target Start/End: Complemental strand, 17140622 - 17140530
Alignment:
Q  385 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| ||||||||||| ||| | |||| |||||    
T  17140622 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcctactttgatatccactaaccatgaacaaacatccacattttctt 17140530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 477
Target Start/End: Original strand, 38463825 - 38463917
Alignment:
Q  385 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  38463825 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 38463917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 167 - 477
Target Start/End: Complemental strand, 8400837 - 8400527
Alignment:
Q  167 gcaacaccgtcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaa 266  Q
    ||||| |||||||||||||||| |||| ||| ||||||| |||| ||||| |||| |||| ||||||||||||| |  ||| | |||||||| |||||||    
T  8400837 gcaacgccgtcttgtcacctctatttgccttccatatttgttgacgttcaatgtacacttgcttgatatttgtcatccaatgtggtcttttgttcttcaa 8400738  T
Q  267 atttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttct 366  Q
    ||||| ||||||||||||||| | || |   |||||||||||||||| ||||| ||||||| |||||||||||||| |||| ||||| ||||||| ||||    
T  8400737 atttatcaaaatattttttggtaacatcttgctcttggtcaagtcacctacaatcttcttgtcatcctcctttaatgtaccagcaagaatgtgtccttct 8400638  T
Q  367 aaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacc 466  Q
    |||    | | |||| | ||||||||||||||||| | ||| || |||| | | || ||||||||||||||||||||| ||| |||||||||||  ||||    
T  8400637 aaagccggctccatcgcatggttgtgaactccattgaaaatgttcaatccccattcttttgtttgcctactaagatatccactaaccatgaacaagcacc 8400538  T
Q  467 tacatattctt 477  Q
     |||| |||||    
T  8400537 cacattttctt 8400527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 43827425 - 43827726
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| |||||||  ||| |||||||||| |||| ||||||||||||| || ||| | |||||||| |||||||||||| |||    
T  43827425 tcttgtcacctctatttgccttccatatttgctgacgttcattgtacacttgcttgatatttgtcatgcaatgtggtcttttgttcttcaaatttatcaa 43827524  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   | |||||||||||||| ||||| ||||||  | ||||||||||||||||| | ||| ||||||| |||||||  | |     
T  43827525 aatatttcttggaagcatcttgcacttggtcaagtcacgtacaatcttcttttcgtcctcctttaatctaccggtaagaatgtgtcattctaaagctggc 43827624  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | | || | ||||||||||||||||||||||| || |||| | | || |||||||| |||||||||||| ||| ||||||||||| ||||| |||| |||    
T  43827625 tccttcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgtctactaagatatccactaaccatgaacaaacacccacattttc 43827724  T
Q  476 tt 477  Q
    ||    
T  43827725 tt 43827726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 183 - 477
Target Start/End: Complemental strand, 47062118 - 47061824
Alignment:
Q  183 acctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattt 282  Q
    |||||| |||| ||| ||||||| |||| |||||| ||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || ||||||||||    
T  47062118 acctctatttgccttccatatttgttgacgttcatcgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaaaatattt 47062019  T
Q  283 tttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatct 382  Q
     ||||||||| |   |||||||||||||||||||||| ||| ||| | ||||||||||||||||| ||||| ||||||| ||| ||| |  | | ||||     
T  47062018 cttggaagcatcttgctcttggtcaagtcacatacaatctttttgtcgtcctcctttaatctaccggcaagaatgtgtccttcaaaagtcggctccatcg 47061919  T
Q  383 cttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
    | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  47061918 catggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 47061824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 18106630 - 18106348
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  18106630 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 18106531  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  18106530 aatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctacctgcaagaatgtgtccttctaaagccggc 18106431  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  18106430 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 18106348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 176 - 369
Target Start/End: Complemental strand, 15060855 - 15060662
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  15060855 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 15060756  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||  ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  15060755 aatattccttggaagcatcttgctctttgtcaagtcacttacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 15060662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 617568 - 617850
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  617568 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 617667  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  617668 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 617767  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  617768 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 617850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 42500649 - 42500367
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  42500649 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 42500550  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||| ||||| |    |||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||| || |||||||    |     
T  42500549 aatatttcttgaaagcatcttgatctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtttccttctaaagccggc 42500450  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  42500449 tccatgggatggttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaa 42500367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 43622954 - 43623236
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  43622954 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 43623053  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  43623054 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 43623153  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  43623154 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 43623236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 45764621 - 45764339
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| |||   ||||||| || ||| | |||| | | ||||||| | || |||    
T  45764621 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcgcatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 45764522  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  45764521 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcattctaaagccggc 45764422  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  45764421 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 45764339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 30787781 - 30787499
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || ||||  || ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | || | | | ||||||| | || |||    
T  30787781 tcttgtcacccctatttgctttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtatctggttcttcaagtgtatcaa 30787682  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  30787681 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 30787582  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30787581 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30787499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 477
Target Start/End: Complemental strand, 21800156 - 21799953
Alignment:
Q  274 aaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttc 373  Q
    ||||||||||||||| |||||   |||||| | ||||||| || ||  ||||||  ||||||||||||||||||  ||| |||||||| |||||||        
T  21800156 aaaatattttttggatgcaccttgctcttgattaagtcacgtataattttcttgttatcctcctttaatctaccgacaaacatgtgtccttctaaagccg 21800057  T
Q  374 gttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatat 473  Q
      | |||| | ||||||||||||||||||| ||| || |||||| | |  ||||||| ||||||||||||| ||| |||||||||||| |||| |||| |    
T  21800056 actccatcgcatggttgtgaactccattaacaatgttcaatctccattgctttgttttcctactaagatatccactaaccatgaacatgcacccacattt 21799957  T
Q  474 tctt 477  Q
    ||||    
T  21799956 tctt 21799953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 208 - 344
Target Start/End: Original strand, 16794464 - 16794600
Alignment:
Q  208 tgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtca 307  Q
    |||||||||||||| |||| ||||||||||||| || | | ||  |||||  |||||||||||  |||||||||||||||   ||||||||| |||||||    
T  16794464 tgatgttcattgtagacttgcttgatatttgtcatggactctttccttttcttcttcaaatttgtcaaaatattttttggtttcaccaaactattggtca 16794563  T
Q  308 agtcacatacaagcttcttgccatcctcctttaatct 344  Q
    |||||  ||||| ||||||| | |||||| |||||||    
T  16794564 agtcatgtacaatcttcttgtcgtcctccattaatct 16794600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 3762111 - 3761964
Alignment:
Q  212 gttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtc 311  Q
    ||||||||||| ||| ||| | ||||||| || | | |||||||||   ||||||||| | |||||||||||||||  ||| |||||||||||||||||     
T  3762111 gttcattgtatgctttctttacatttgtcatgcactcttgtctttttcccttcaaattcatcaaaatattttttggctgcatcaaactcttggtcaagtt 3762012  T
Q  312 acatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 359  Q
    || || || ||| ||| |||| ||| ||||||| ||| ||||||||||    
T  3762011 acctagaatctttttgtcatcttcccttaatcttccctcaagcatgtg 3761964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 273 - 408
Target Start/End: Original strand, 20908433 - 20908568
Alignment:
Q  273 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 372  Q
    ||||||||||||| |  |||||||||||||||| |||||||  |||| ||||||| |||||||| ||||||| || ||||| ||||| | ||||||  ||    
T  20908433 caaaatatttttttgttgcaccaaactcttggtaaagtcacgcacaatcttcttgtcatcctcccttaatcttcctgcaagaatgtgcccttctaacatt 20908532  T
Q  373 cgttacatctcttggttgtgaactccattaagaata 408  Q
         | |||| ||||||||||||||||||||||||    
T  20908533 gccgtcgtctcatggttgtgaactccattaagaata 20908568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 353
Target Start/End: Original strand, 8194146 - 8194276
Alignment:
Q  223 acttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagct 322  Q
    |||| ||||||||||||| || | | |||||||||  |||||||||||  |||||||||||||||   |||| |||| ||| ||||||||  ||||| ||    
T  8194146 acttgcttgatatttgtcatggactcttgtcttttcttcttcaaatttgtcaaaatattttttggtttcaccgaactattgctcaagtcatgtacaatct 8194245  T
Q  323 tcttgccatcctcctttaatctacccgcaag 353  Q
    ||||| | |||||| ||||||| ||||||||    
T  8194246 tcttgtcgtcctccattaatcttcccgcaag 8194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 176 - 460
Target Start/End: Original strand, 35965564 - 35965848
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  35965564 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 35965663  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  35965664 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 35965763  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  35965764 tccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 35965848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 182 - 477
Target Start/End: Complemental strand, 7169136 - 7168841
Alignment:
Q  182 cacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatatt 281  Q
    ||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||||||||    
T  7169136 cacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatggaatgtggtcttttgttcttcaaatgtatcaaaatatt 7169037  T
Q  282 ttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatc 381  Q
    | ||||||||| |   |||||||||||||||| ||||| | ||||| | ||||||||||||||||  ||||| |||| || ||||||| |  | | ||||    
T  7169036 tcttggaagcatcttgctcttggtcaagtcacgtacaatcatcttgtcgtcctcctttaatctactagcaagaatgtatccttctaaagtcggctccatc 7168937  T
Q  382 tcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
     | ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| |||||||||||  |||| |||| |||||    
T  7168936 gcatggttgtgaactccattaagaatgttcaatccccactcctttgtttgcctactttgatatccactaaccatgaacaagcacccacattttctt 7168841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 39751847 - 39752148
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  39751847 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 39751946  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| |||   || |||| |||||||    ||    
T  39751947 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcataaatatgtcattctaaagccggt 39752046  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||  | ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| || |||||||| ||| | |||| |||    
T  39752047 tccattgcatggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccaccaatcatgaacaaacatccacattttc 39752146  T
Q  476 tt 477  Q
    ||    
T  39752147 tt 39752148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 477
Target Start/End: Complemental strand, 45455616 - 45455317
Alignment:
Q  178 ttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaa 277  Q
    ||||||||||| |||| ||||||||||| |||| ||| |||||| |||| ||| | ||||||| || ||| | || ||||| ||||||||| || |||||    
T  45455616 ttgtcacctctatttgcctttcatatttgttgacgttgattgtacacttgcttcacatttgtcatgcaatatggtattttgttcttcaaatgtatcaaaa 45455517  T
Q  278 tattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgtta 377  Q
    ||||| |||||||||     |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| ||||||| |  | |     
T  45455516 tatttcttggaagcattttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagtcggctc 45455417  T
Q  378 catctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
    |||| | ||||||| ||||||||||||||| |  |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  45455416 catcgcatggttgttaactccattaagaatgtccaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 45455317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 43688990 - 43689291
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||| |||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  43688990 tcttatcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 43689089  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| || |||||| |   |||||||||||||||| ||||| ||||||| | ||||| ||||||||||| ||||| ||||||| |||||||          
T  43689090 aatatttcttcgaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcttttaatctaccggcaagaatgtgtccttctaaagccgac 43689189  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  43689190 tccatcgcatggttgtgaactccattaagaatgttaaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 43689289  T
Q  476 tt 477  Q
    ||    
T  43689290 tt 43689291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 176 - 460
Target Start/End: Complemental strand, 43371009 - 43370725
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||| |||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||||| || |||    
T  43371009 tcttgtcagctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttcaaatgtatcaa 43370910  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| ||||||| |||||||          
T  43370909 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtccttctaaagccgac 43370810  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
    | |||| | ||||||||||||||||||||||| || || | | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  43370809 tccatcgcatggttgtgaactccattaagaatgttcaaaccccattcctttgtttgcttactttgatatccactaatcatgaaca 43370725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 7341321 - 7341039
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  7341321 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 7341222  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  7341221 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 7341122  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  7341121 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 7341039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 8422675 - 8422957
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  8422675 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 8422774  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  8422775 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcattctaaagccggc 8422874  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    | ||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8422875 tccatgggatagttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8422957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 30304429 - 30304711
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  30304429 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctatggttcttcaagtgtatcaa 30304528  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  30304529 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 30304628  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30304629 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30304711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 32377727 - 32378009
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  32377727 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 32377826  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  32377827 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 32377926  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32377927 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32378009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 32431684 - 32431966
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  32431684 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 32431783  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  32431784 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 32431883  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32431884 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32431966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 369
Target Start/End: Complemental strand, 1116014 - 1115821
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| | ||  || | ||||||| || ||| | |||||| | ||||||| | || |||    
T  1116014 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacatttgtttcacatttgtcatgcaatgtggtctttggttcttcaattgtatcaa 1115915  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  1115914 aatatttcttggaagcatcttgctcttggtcaagtcacgtactatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 1115821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 261 - 477
Target Start/End: Original strand, 14401676 - 14401894
Alignment:
Q  261 cttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcaca--tacaagcttcttgccatcctcctttaatctacccgcaagcatgt 358  Q
    ||||||||| | |||||||||||||||  ||||||||||||||||||||||| |  ||||| ||||||| |||| ||| ||||||| || ||||| ||||    
T  14401676 cttcaaattcatcaaaatattttttggtggcaccaaactcttggtcaagtcatatgtacaatcttcttgtcatcatcccttaatcttcctgcaagaatgt 14401775  T
Q  359 gtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | | |||||||||| |   ||  || ||||||||||||||||||||||||   ||  || |||| ||||||| |||||||| |||| || | | | ||||    
T  14401776 gccattctaaacttggcaccaattcatggttgtgaactccattaagaatagccaacttccaatcctttgtttccctactaacatatccatgcaacttgaa 14401875  T
Q  459 catacacctacatattctt 477  Q
    || ||||| |||| |||||    
T  14401876 cacacacccacattttctt 14401894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 407
Target Start/End: Complemental strand, 22581048 - 22580914
Alignment:
Q  273 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 372  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| ||||||| |     
T  22581048 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagtc 22580949  T
Q  373 cgttacatctcttggttgtgaactccattaagaat 407  Q
     | | |||| | ||||||| |||||||||||||||    
T  22580948 ggctccatcgcatggttgtaaactccattaagaat 22580914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 190 - 437
Target Start/End: Original strand, 2145837 - 2146070
Alignment:
Q  190 tttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaatattttttggaa 289  Q
    |||| ||| ||||||| ||||||||||||||| |||| ||| | ||||||| || ||| |  ||||||| ||||||||| || |||||||||| ||||||    
T  2145837 tttgccttccatatttgttgatgttcattgtacacttgcttcacatttgtcatgcaatgtgatcttttgttcttcaaatgtatcaaaatatttcttggaa 2145936  T
Q  290 gcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggtt 389  Q
    |||      ||||| |         ||||| ||||||| | ||||||||||||||||| ||||| || |||| ||||||| |  | | |||| | |||||    
T  2145937 gca------tcttgttg--------tacaatcttcttgtcgtcctcctttaatctaccggcaagaatatgtccttctaaagtcggctccatcgcatggtt 2146022  T
Q  390 gtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 437  Q
    |||||||||||||| ||| || |||||| | |||||||||||| ||||    
T  2146023 gtgaactccattaaaaatgttcaatctccattcatttgtttgcttact 2146070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 176 - 477
Target Start/End: Complemental strand, 17311 - 17010
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | |||| || || ||| | |||||||| ||||||||| || |||    
T  17311 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttttcatgcaatgtggtcttttgttcttcaaatgtatcaa 17212  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| ||||||| |||||||    |     
T  17211 aatatttcttggaagcatcttgctcttggtcaagtcacttacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtccttctaaagccggc 17112  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  17111 tccatcgcatggttgtgaactccattaagaatgttcaatccctattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 17012  T
Q  476 tt 477  Q
    ||    
T  17011 tt 17010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 176 - 477
Target Start/End: Complemental strand, 18607238 - 18606937
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||| |||| ||| | ||||||| || ||| | |||||||| | ||||||| || |||    
T  18607238 tcttatcacctctatttgccttccatatttgttgatgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttattcaaatgtatcaa 18607139  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||| |  |||| ||||||| ||||||| |  |     
T  18607138 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcgacaagaatgtgtccttctaaagtcggc 18607039  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||    
T  18607038 tccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttc 18606939  T
Q  476 tt 477  Q
    ||    
T  18606938 tt 18606937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 178 - 477
Target Start/End: Complemental strand, 24220408 - 24220107
Alignment:
Q  178 ttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaa 277  Q
    ||||||||||| |||| ||| ||||||| |||| ||| ||| || |||||||||||||||||| || ||| | |||||||| | |||||||||| |||||    
T  24220408 ttgtcacctctatttgccttccatatttgttgacgtttattttacacttacttgatatttgtcatgcaatgtggtcttttgtttttcaaatttatcaaaa 24220309  T
Q  278 tattttttggaagcacc--aaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||| ||||||||| |  |  |||||||||||||||| || ||  |||||| | |||||||||||||||||  |||| ||||||| |||||||          
T  24220308 tatttcttggaagcatcttatgctcttggtcaagtcacgtataattttcttgtcgtcctcctttaatctaccgacaagaatgtgtccttctaaagccgac 24220209  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattc 475  Q
    | |||| | |||||||||||| |||||||||| || |||| | | |||||||||| ||||||||||||| ||| ||||||| |||  |||| |||| |||    
T  24220208 tccatcgcatggttgtgaactgcattaagaattttcaatccccattcatttgttttcctactaagatatccactaaccatggacaagcacccacattttc 24220109  T
Q  476 tt 477  Q
    ||    
T  24220108 tt 24220107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 176 - 407
Target Start/End: Complemental strand, 31147564 - 31147333
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | |||| || || ||| | |||||||| ||||||||| ||  ||    
T  31147564 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcaaatttatcatgcaatgtggtcttttgttcttcaaatgtataaa 31147465  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||  ||||||||| |   |||||| ||||||||| ||||| ||||||| ||| ||||||||||||||| ||||| ||||||| ||||||| |  |     
T  31147464 aatattacttggaagcatcttgctcttgatcaagtcacgtacaatcttcttgtcattctcctttaatctaccggcaagaatgtgtccttctaaagtcggc 31147365  T
Q  376 tacatctcttggttgtgaactccattaagaat 407  Q
    | |||| | |||||||||||||||||||||||    
T  31147364 tccatcgcatggttgtgaactccattaagaat 31147333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 458
Target Start/End: Complemental strand, 28251134 - 28250856
Alignment:
Q  180 gtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaaaata 279  Q
    ||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||||||    
T  28251134 gtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaaaata 28251035  T
Q  280 ttttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttaca 379  Q
    ||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||| | ||||| ||||||| |||||||  | | | ||    
T  28251034 tttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtccttctaaagctggctcca 28250935  T
Q  380 tctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    |    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  28250934 tgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 28250856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 176 - 437
Target Start/End: Original strand, 29287767 - 29288028
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    ||||||||||||| |||| ||| ||||||| |||| |||||||||| |||| ||| | |||| || || ||| | |||||||| ||||||||| || |||    
T  29287767 tcttgtcacctctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttttcatgcaatgtggtcttttgttcttcaaatgtatcaa 29287866  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| ||||||| || ||||          
T  29287867 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtccttataaagccgac 29287966  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 437  Q
    | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||    
T  29287967 tccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttact 29288028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 1611570 - 1611852
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  1611570 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 1611669  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  1611670 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 1611769  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  1611770 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 1611852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 251 - 369
Target Start/End: Original strand, 21358241 - 21358359
Alignment:
Q  251 gtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 350  Q
    |||||||| ||||||||| || |||||||||| ||||||||| |   |||||||||||||||  ||||| ||||||| | ||||||||||||||| | ||    
T  21358241 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggc 21358340  T
Q  351 aagcatgtgtctttctaaa 369  Q
    ||| ||||||| |||||||    
T  21358341 aagaatgtgtccttctaaa 21358359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 251 - 369
Target Start/End: Original strand, 23962223 - 23962341
Alignment:
Q  251 gtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 350  Q
    |||||||| ||||||||| || |||||||||| ||||||||| |   |||||||||||||||  ||||| ||||||| | ||||||||||||||| | ||    
T  23962223 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggc 23962322  T
Q  351 aagcatgtgtctttctaaa 369  Q
    ||| ||||||| |||||||    
T  23962323 aagaatgtgtccttctaaa 23962341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 460
Target Start/End: Complemental strand, 7362299 - 7362137
Alignment:
Q  298 ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 397  Q
    |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| ||||||| ||||||| |    | |||| | |||||||||||||    
T  7362299 ctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtcattctaaagtcgactccatcgcatggttgtgaactc 7362200  T
Q  398 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 460  Q
    |||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||    
T  7362199 cattaagaatgttcaatccacattcctttgtttgcttactttgatatccactaatcatgaaca 7362137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 408
Target Start/End: Original strand, 34111598 - 34111713
Alignment:
Q  293 ccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtg 392  Q
    ||||||||||||||||||||| ||||| ||||| | |||| ||||||||||| || ||||| || |  | ||||||  || |   |||||| ||||||||    
T  34111598 ccaaactcttggtcaagtcacgtacaatcttctagtcatcttcctttaatcttcctgcaagaattttcccttctaactttggcgccatctcatggttgtg 34111697  T
Q  393 aactccattaagaata 408  Q
    ||||||||||||||||    
T  34111698 aactccattaagaata 34111713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 477
Target Start/End: Complemental strand, 35243636 - 35243544
Alignment:
Q  385 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
    ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  35243636 tggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 35243544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 458
Target Start/End: Original strand, 13387722 - 13387795
Alignment:
Q  385 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| |||||| ||||||    
T  13387722 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacgaatcatgaa 13387795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 167 - 477
Target Start/End: Complemental strand, 12514 - 12203
Alignment:
Q  167 gcaacaccgtcttgtcacctctgtttgactttc-atatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttca 265  Q
    |||||| | ||||||||||||| |||| ||||| |||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||||| ||||||    
T  12514 gcaacagcttcttgtcacctctatttgcctttcgatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtcttttgttcttca 12415  T
Q  266 aatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttc 365  Q
    ||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| | ||| ||||||| |||    
T  12414 aatgtatcaaaatatttcttggaagcatctttctcttggtcaagtcacgtacaatcttcttgtcgtcctccattaatctaccggaaagaatgtgtccttc 12315  T
Q  366 taaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacac 465  Q
    ||||    | | |||  | ||||| ||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||    
T  12314 taaagccagctccatggcatggttttgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcac 12215  T
Q  466 ctacatattctt 477  Q
    | |||| |||||    
T  12214 ccacattttctt 12203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 2123 - 1841
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  2123 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 2024  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  2023 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 1924  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  1923 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 1841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 369
Target Start/End: Original strand, 16176 - 16369
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || ||||  || ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||||| | ||||||||| || |||    
T  16176 tcttgtcacccctatttgcgttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctttggttcttcaaatgtatcaa 16275  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 369  Q
    ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  16276 aatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcttcctcctttaatctaccggcaagaatgtgtccttctaaa 16369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Complemental strand, 34051 - 33769
Alignment:
Q  176 tcttgtcacctctgtttgactttcatatttattgatgttcattgtatacttacttgatatttgtcttgtaattttgtcttttggtcttcaaatttaacaa 275  Q
    |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| ||| | ||||||| || ||| | |||| | | ||||||| | || |||    
T  34051 tcttgtcacccctatttgccttccatatttgttgacgttcattgtacacttgcttcacatttgtcatgcaatgtggtctctggttcttcaagtgtatcaa 33952  T
Q  276 aatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgt 375  Q
    ||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    |     
T  33951 aatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggc 33852  T
Q  376 tacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 458  Q
    | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  33851 tccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 33769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 477
Target Start/End: Original strand, 111 - 290
Alignment:
Q  298 ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 397  Q
    |||||||||||||||| ||||| ||||||| | | |||||||| ||||| || ||| ||||||| |||||||    | | |||| | |||||||||||||    
T  111 ctcttggtcaagtcacgtacaatcttcttgtcgttctcctttagtctactcgtaagaatgtgtccttctaaagccggctccatcgcatggttgtgaactc 210  T
Q  398 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 477  Q
    |||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  211 cattaagaatgttcaatcaccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University