View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_87 (Length: 319)
Name: NF10233A_low_87
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_87 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 36345551 - 36345860
Alignment:
| Q |
10 |
ggtgtttgacaaagacacatatgattatggttacatttaatttatctacattcttaaattattacaggtgtcaacgttaagtgacgtgtccgatgtatgt |
109 |
Q |
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| T |
36345551 |
ggtgtttgacaaagacacatatggttatggttacatttaatttatctacattcttaaattattacaggtgtcaacattaagtgacgtgtccgatgtatgt |
36345650 |
T |
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| Q |
110 |
ttctgggttattattccatattagatgcatattattctattctaacacaaacattatttttaagttagtaagtatataacttgatgtatgctttgtttaa |
209 |
Q |
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| T |
36345651 |
ttctgggttattattccatattagatgcatattattctattctaacacaaacattatttttaagttagtaagtatataacttgatgtatgctttgtttaa |
36345750 |
T |
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| Q |
210 |
tttcgctatagctagtgaatgctatgcgatacaagaaagtttagacaacttttaattaatgaatgtatagagtagcaatgtgttagttctagaacctaag |
309 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36345751 |
tttcgctatagctagtgaatgctatgtgatacaagaaagtttagacaacttttaattaatgaatgtatagagtagcaatgtgttagttctagaacctaag |
36345850 |
T |
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| Q |
310 |
ctactattga |
319 |
Q |
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| T |
36345851 |
ctactattga |
36345860 |
T |
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