View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_91 (Length: 316)
Name: NF10233A_low_91
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_91 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 134 - 300
Target Start/End: Complemental strand, 53219620 - 53219454
Alignment:
| Q |
134 |
caacaatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatg |
233 |
Q |
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| T |
53219620 |
caacaatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatg |
53219521 |
T |
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| Q |
234 |
taaaatgttatcatattcgtgcagtagtttttcttttgttgttctgttattttgcactcattgatgt |
300 |
Q |
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| T |
53219520 |
taaaatgttatcatatttgtgcagtagcttttcttttgttgttctgttattttgcactcattgatgt |
53219454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 53219669 - 53219811
Alignment:
| Q |
1 |
aaggaggaatttgaaacagatatatattttctaatatttttacttatactaactttcttgccacaatttctcgatcctttgcctctgatcgattgaacca |
100 |
Q |
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| T |
53219669 |
aaggaggaatttgaaacagatatatattttctaatatttttacttatactaactttcttgccacaatttctcgatcctttgcctctgatcgattgaacca |
53219768 |
T |
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| Q |
101 |
gatacatcctacactctccaaaatggtgctttgcaacaatcct |
143 |
Q |
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| T |
53219769 |
gatacatcctacactctccaaaatggtgctttgcaacaatcct |
53219811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 138 - 298
Target Start/End: Complemental strand, 15411519 - 15411350
Alignment:
| Q |
138 |
aatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatgtaaa |
237 |
Q |
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| T |
15411519 |
aatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtatttgaatcatttgcaattacagtcatgtaaa |
15411420 |
T |
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| Q |
238 |
---------atgttatcatattcgtgcagtagtttttcttttgttgttctgttattttgcactcattgat |
298 |
Q |
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| T |
15411419 |
atgcagtttatgttatcatattagtgcaatagcttttctttttttgttctgttattttgcacccattgat |
15411350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 15411804 - 15411908
Alignment:
| Q |
39 |
tttacttatactaactttcttgccacaatttctcgatcctttgcctctgatcgattgaaccagatacatcctacactctccaaaatggtgctttgcaaca |
138 |
Q |
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| T |
15411804 |
tttacttatactaactttcttgccacaatttctcgatcctttgcttctgatcgattgaaccaaatgcatcctacactctccaaaatggtgctttgcaaca |
15411903 |
T |
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| Q |
139 |
atcct |
143 |
Q |
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||||| |
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| T |
15411904 |
atcct |
15411908 |
T |
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