View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_92 (Length: 316)
Name: NF10233A_low_92
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_92 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 181 - 303
Target Start/End: Original strand, 13608925 - 13609047
Alignment:
| Q |
181 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
280 |
Q |
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| T |
13608925 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
13609024 |
T |
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| Q |
281 |
acttcaactttacctagcaatat |
303 |
Q |
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| T |
13609025 |
acttcaactttacctggcaatat |
13609047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 13608750 - 13608867
Alignment:
| Q |
6 |
aagtttactaacaaaactttacctgtttcattgaacgaataattttcaaggatttgactgaatttttcaattaattacagtagcgctttgtcattatatt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13608750 |
aagtttactaacaaaactttacctgtttcattgaacgaataattttcaaggatttgactgaatttttcaattaattacagtagcactttgtcattatatt |
13608849 |
T |
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| Q |
106 |
tgatgtttactgtcatga |
123 |
Q |
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| T |
13608850 |
tgatgtttactgtcatga |
13608867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 31244876 - 31244989
Alignment:
| Q |
183 |
tgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaaac |
282 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||| | ||||| | |
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| T |
31244876 |
tgtgatgatttggtatttctatcctctggtcttttaggccacaatatgcagagattggaaaaattattaaagaggtaacatgcttattgagtcacaaatc |
31244975 |
T |
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| Q |
283 |
ttcaactttaccta |
296 |
Q |
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| T |
31244976 |
ttcaactttaccta |
31244989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 6472799 - 6472704
Alignment:
| Q |
181 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaa |
276 |
Q |
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|||||||||||||||||||||||| |||||||||| |||| || ||||||| ||||||| |||||||||||||||| ||| | ||||||||||||| |
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| T |
6472799 |
catgtgatgatttggaatttctattctctggtcttttaggtcacaatatgcggagattgaaaaaattattaaaaaggtaagaagcttattgggaaa |
6472704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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