View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_96 (Length: 312)
Name: NF10233A_low_96
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_96 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 34793218 - 34792942
Alignment:
| Q |
30 |
ttaaggattcttctgaagaaatggatgatttccttgatcgtgtaattgtagagcataagatgtctaggagggaccctaagaagaaagatttccttgacat |
129 |
Q |
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| T |
34793218 |
ttaaggattcttctgaagaaatggatgatttccttgatcgtgtaattgtagagcataagatgtctaggagggaccctaagaagaaagatttccttgacat |
34793119 |
T |
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| Q |
130 |
cctccttcaacttcagaacgatggtcttacagaattcgagctcacacaaaatgacttaaaagcactcttaatggtttttctatctatccctttctcctca |
229 |
Q |
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| T |
34793118 |
tctccttcaacttcaggacgatggtcttacagaattcgagctcacacaaaatgacttaaaagcactcttaatggtttttctatctatccctttctcctca |
34793019 |
T |
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| Q |
230 |
tggnnnnnnnntccattgataaattatattcaaatatctaagaccgtgattgtcacctcgacatcaatattcttcga |
306 |
Q |
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| T |
34793018 |
tggaaaaaaaatccattgataaattatattcaaatatctaggaccgtgattgtcacctcgacatcaatatttttcga |
34792942 |
T |
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Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 34417210 - 34417396
Alignment:
| Q |
43 |
tgaagaaatggatgatttccttgatcgtgtaattgtagagcataagatgtctaggagggaccctaagaagaaagatttccttgacatcctccttcaactt |
142 |
Q |
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| T |
34417210 |
tgaagaaatgaatgatttctttgatagtgtaattgtcgagcataagatggctacgagggaccccaacaagaaagatttcctcgacattctccttcaactt |
34417309 |
T |
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| Q |
143 |
cagaacgatggtcttacagaattcgagctcacacaaaatgacttaaaagcactcttaatggtttttctatctatccctttctcctcat |
230 |
Q |
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| T |
34417310 |
caggatgatggtcgttcagagttagacctcacacagaatgacttaaaagcactgttaatggtttttct-tctatccctttctcatcat |
34417396 |
T |
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