View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_98 (Length: 309)
Name: NF10233A_low_98
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_98 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 4 - 309
Target Start/End: Original strand, 177899 - 178204
Alignment:
| Q |
4 |
aggaggatgaagatgtgcctctacttatgggtaggaacttcatgcaaacagcccgaatgatgattgacctcgatgataacatcatgaaggtcaaagttga |
103 |
Q |
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| T |
177899 |
aggaggatgaagatgtgcctctacttatgggtaggaacttcatgcaaattgcccgaatgatgattgacctcgatgataacatcatgaaggtcaaagttga |
177998 |
T |
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| Q |
104 |
taatgaagaggttactttcaacattcgtgaagccataaagcactcaaaagacaagttcggatgttttaaaatggatgcaaccgaagaagtcatcatgacc |
203 |
Q |
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| T |
177999 |
taaagaagaggttactttcaacattcgtgaagccataaagcactcaaaagacaagttcggatgttttaaaatggatgcaaccgaagaagtcatcatgacc |
178098 |
T |
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| Q |
204 |
acccggaagcaatttcataaacgcacgcctcttgaaagtgctttgacagtcgcactcaacaccataagtgccgaagaggcaagagaaattgaagaatgtt |
303 |
Q |
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| T |
178099 |
acccggaagcaatttcataaacgaacgcctcttgaaagtgctttgacagtcgcactcaacaccataagtgccgaagaggcaagagaaattgaagaatgtt |
178198 |
T |
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| Q |
304 |
tgaagg |
309 |
Q |
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| T |
178199 |
tgaagg |
178204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 249
Target Start/End: Original strand, 20171520 - 20171766
Alignment:
| Q |
4 |
aggaggatgaagatgtgcctctacttatgggtaggaacttcatgcaaacagcccgaatgatgattgacctcgatgataacatcatgaaggtcaa-agttg |
102 |
Q |
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| T |
20171520 |
aggaggatgatgatgtacctatacttttgggaagatacttcatgcaaacggcacggatgatgattgacctcgatgataatattatgaaagttaagagttg |
20171619 |
T |
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| Q |
103 |
ataatgaagaggttactttcaacattcgtgaagccataaagcactcaaaagacaagttcggatgttttaaaatggatgcaaccgaagaagtcatcatgac |
202 |
Q |
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| T |
20171620 |
ttaatgaagaggtaactttcaacattcgtgaagccattaagcactcaaaagataagagtgtatgctttaaaatggatgcaaccgaagaagtcatcatgac |
20171719 |
T |
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| Q |
203 |
cacccggaagcaatttcataaacgcacgcctcttgaaagtgctttga |
249 |
Q |
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| T |
20171720 |
cactcggaagcaatttcataaccaaacgccccttgaaagtgctttga |
20171766 |
T |
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