View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233_high_3 (Length: 216)
Name: NF10233_high_3
Description: NF10233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 21834601 - 21834804
Alignment:
| Q |
14 |
tcaacttacaaatgtgcatttactcattgcttgataatttccaaagtatatataatgtacaatgtaatgcaagcggttgaatgtcgtgttgttaaatgtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21834601 |
tcaacttacaaatgtgcatttactcattgcttgataatttccaaagtatatataatgtacaatgtaatgcaagcggttgaatgtcgtgttgttaaatgtg |
21834700 |
T |
|
| Q |
114 |
tgtgtacatagtttta-gttttattttt--------accatcgttgtactctcaaataccacctccaccatttttgtactcaaaacgccgcttccacctt |
204 |
Q |
| |
|
||||| |||||||||| ||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21834701 |
tgtgttcatagttttatgtttttttttttttttttatccatcgttgtactcccaaatagcacctccaccatttttgtactcaaaacgccgcttccacctt |
21834800 |
T |
|
| Q |
205 |
tgct |
208 |
Q |
| |
|
|||| |
|
|
| T |
21834801 |
tgct |
21834804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 62 - 182
Target Start/End: Complemental strand, 28525035 - 28524911
Alignment:
| Q |
62 |
tatataatgtacaatgtaatgcaagcggttgaatgtcgtgttgttaaatgtgtgtgt----acatagttttagttttatttttaccatcgttgtactctc |
157 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| || || ||||||||||||||| | ||||||||||| | ||||||||||||||||||||| ||| |
|
|
| T |
28525035 |
tatataatgtgcaatgcaatgcaagcagttgagtgaagttttgttaaatgtgtgtatgtggacatagttttactattatttttaccatcgttgtaccctc |
28524936 |
T |
|
| Q |
158 |
aaataccacctccaccatttttgta |
182 |
Q |
| |
|
||| ||||||||||||| |||||| |
|
|
| T |
28524935 |
aaacgccacctccaccatctttgta |
28524911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 46926743 - 46926701
Alignment:
| Q |
64 |
tataatgtacaatgtaatgcaagcggttgaatgtcgtgttgtt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46926743 |
tataatgtacaatgtaatgcaagcggttgaatgtcgtgttgtt |
46926701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 14800940 - 14800856
Alignment:
| Q |
101 |
gttgttaaatgtgtgtgtacatagttttagttttatttttaccatcgttgtactctcaaataccacctccaccatttttgtactc |
185 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||| | |||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
14800940 |
gttgttaaatgtgtgtgtacatagcattagtttcattgttaccgccattgtaccctcaaactccacctccaccatctttgtactc |
14800856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University