View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233_low_10 (Length: 231)
Name: NF10233_low_10
Description: NF10233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 41967988 - 41968203
Alignment:
| Q |
1 |
aattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcccggaggtacacacaagcat |
100 |
Q |
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| T |
41967988 |
aattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcat |
41968087 |
T |
|
| Q |
101 |
ttggcacaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacattgaggagcacattctacaatttcaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41968088 |
ttggcacaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacatcgaggagcacattctacaatttcaacca |
41968187 |
T |
|
| Q |
201 |
tgcaatattagttagt |
216 |
Q |
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|||||||||||||||| |
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| T |
41968188 |
tgcaatattagttagt |
41968203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 1234996 - 1235210
Alignment:
| Q |
1 |
aattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcccggaggtacacacaagcat |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1234996 |
aattcaaggacattttggtcctccttctttagtcttccagtcgttatagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcat |
1235095 |
T |
|
| Q |
101 |
ttggcacaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacattgaggagcacattctacaatttcaacca |
200 |
Q |
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| T |
1235096 |
tttgcacaacaatacttgcaatagaacaaacatggttttctgtgatgtgtttttgagcatctatcttcacatcgaggagcacattctacaatttcaacca |
1235195 |
T |
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| Q |
201 |
tgcaatattagttag |
215 |
Q |
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|||||||||| |||| |
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| T |
1235196 |
tgcaatattaattag |
1235210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 35649515 - 35649673
Alignment:
| Q |
6 |
aaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcccggaggtacacacaagcatttggc |
105 |
Q |
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|||| ||||| |||||||| |||||||||||| | ||| ||||| || ||||| | |||||| |||||| || ||||| |||||||| || ||||| |
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| T |
35649515 |
aagggcatttgggtcctccccttttggtcttccagttgttgtagcaagggcaaacctgcttgttgccataatagccaggaggcacacacaaacacttggc |
35649614 |
T |
|
| Q |
106 |
acaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctat |
164 |
Q |
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|||||| | |||||| |||| || ||||| || |||| ||||| ||||||||||||| |
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| T |
35649615 |
acaacacttgttgcaaaagaataagcatggcttcttgtattgtgtgtttgagcatctat |
35649673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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