View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233_low_2 (Length: 417)
Name: NF10233_low_2
Description: NF10233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 56165708 - 56165306
Alignment:
| Q |
18 |
gatggtatgtttgaccaaccagcacggtgtctttctaagcgcgaaatgaacacgcaacaatggagatnnnnnnnnn---ctgaaggaagatgtttacagg |
114 |
Q |
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| T |
56165708 |
gatggtgtgtttgaccgaccagcacggtgtctttctaagcgcgaaatgaacacgcaacaatggagataaaaaaaaaaaactgaaggaagatgtttacagg |
56165609 |
T |
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| Q |
115 |
ctgcaaagtcagtgcaatgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaagaaacttgcttttagtaaaagca |
214 |
Q |
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| T |
56165608 |
ctgcaaagtcagtgcaatgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaagaaacttgcttttagtaaaagca |
56165509 |
T |
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| Q |
215 |
ttggtggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaatcacaccaacagacttggtgtaaaccaatatgct |
314 |
Q |
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| T |
56165508 |
ttggtggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaaacacaccaacagacttggtgtaaaccaatatgct |
56165409 |
T |
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| Q |
315 |
attaacctccaaagttccacttcttaattaaatctctttccttactatattgaacccaaaattctgctgcaagctctgtcaatcacttaaccgcacgaac |
414 |
Q |
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| T |
56165408 |
attaacctccaaagttccacttcttaattaaatctctttccttactatattgaacccaaaattctgctgcaagctctgtcaatcgcttaaccgcacgaac |
56165309 |
T |
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| Q |
415 |
aaa |
417 |
Q |
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| T |
56165308 |
aaa |
56165306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 44263964 - 44263708
Alignment:
| Q |
20 |
tggtatgtttgaccaaccagcacggtgtctttctaagcgcgaaatgaacacgcaacaa-tggagatnnnnnnnnnctgaaggaagatgtttacaggctgc |
118 |
Q |
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| T |
44263964 |
tggtgtgttggacccacaagcacggtgtctttctaagcgcgaaatgaacacacaacaaatggagataaaaaaa--ctgaaggaagatgtttacaggctgc |
44263867 |
T |
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| Q |
119 |
aaagtcagtgcaatgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaagaaacttgcttttagtaaaagcattgg |
218 |
Q |
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| T |
44263866 |
agagtcagtgcaatgtcatgcaagcacagatggacaagatggctgagaagaagaaaagtttcttcaaatggaagaaacttgcttttagtaaaagcat--- |
44263770 |
T |
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| Q |
219 |
tggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaa |
280 |
Q |
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| T |
44263769 |
cggagagatggagaatgttgaacaagatgaagctgaaactgaatttggatttggaaggcaaa |
44263708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 276 - 405
Target Start/End: Complemental strand, 44262911 - 44262785
Alignment:
| Q |
276 |
gcaaatcacaccaacagacttggtgtaaaccaatatgctatt-aacctccaaagttccacttcttaattaaatctctttccttactatattgaacccaaa |
374 |
Q |
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| T |
44262911 |
gcaaaacacaccaacagacttggtgtaaaccaatatgctatttaacctccaaagctcctctccttag----atctccttccttactatattgaacccaaa |
44262816 |
T |
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| Q |
375 |
attctgctgcaagctctgtcaatcacttaac |
405 |
Q |
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| T |
44262815 |
actctgctgcaagctctgtaaatcgcttaac |
44262785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 44259687 - 44259653
Alignment:
| Q |
356 |
ttactatattgaacccaaaattctgctgcaagctc |
390 |
Q |
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| T |
44259687 |
ttacgatattgaacccaaaattctgctgcaagctc |
44259653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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