View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233_low_5 (Length: 295)
Name: NF10233_low_5
Description: NF10233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 4 - 291
Target Start/End: Original strand, 34338128 - 34338415
Alignment:
| Q |
4 |
tgagatggacatcaatataaactgcttattagatgacatggagtttttcaaatatatagcacacatttcctagtttaacgaataacaggctataaacggt |
103 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34338128 |
tgagatagacatcaatataaactgcttattagatgacatggagtttttcaaatatatagcacacatttcctagtttaacgaataacaggctataaaaggt |
34338227 |
T |
|
| Q |
104 |
gtgatgaatgactacagtccattaccagttcaacaataatatcatgtaacataaattttatctgtagtccatactaagctatcggaatgtatgtatataa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34338228 |
gtgatgaatgactacagtccattaccagttcaacaataatatcatgtaacataaattttatctgtagtccatactaagctatcggaatgtatgtatataa |
34338327 |
T |
|
| Q |
204 |
cttacattcaaaaatatttgaggcattcttccacccaaatatataactgccattgcccaaccaaagaaggtcccaatgctacttgttc |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34338328 |
cttacattcaaaaatatttgaggcattcttccacccaaatatataactgccattgcccaaccaaagaaggtcccaatgctacttgttc |
34338415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 9072854 - 9072940
Alignment:
| Q |
198 |
atataacttacattcaaaaatatttgaggcattcttccacccaaatatataactgccattgcccaaccaaagaaggtcccaatgcta |
284 |
Q |
| |
|
|||||||||||||||||| | |||||||| | ||||||||||| |||||||||||||||||||||||||| | | || ||||||||| |
|
|
| T |
9072854 |
atataacttacattcaaacaaatttgaggaagtcttccacccatatatataactgccattgcccaaccaaggtaagttccaatgcta |
9072940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University