View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233_low_6 (Length: 250)
Name: NF10233_low_6
Description: NF10233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5689771 - 5689536
Alignment:
| Q |
1 |
ttatctccattattgtgctctccaaattccactagataaacctgtgagaaaatccaatagatatgaattcctacatagaaatccagaggagnnnnnnnng |
100 |
Q |
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| T |
5689771 |
ttatgtccattattgtgctctccaaattccactagataaacctgtgagaaaatccaatagatatgaattcctacatagaaatccagaggagaaaaaaaag |
5689672 |
T |
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| Q |
101 |
attatgnnnnnnnnnnnnnnnnnaaaaaatgaaagacctgattatttttggcgcatgagaccaatggaagaaggagaaggaataggcatgtcattgaaac |
200 |
Q |
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| T |
5689671 |
attatgagtagtagtag-------aaaaatgaaagacctgattatttttggtgcatgagaccaatggaagaaggagaaggaataggcatgtcattgaaac |
5689579 |
T |
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| Q |
201 |
gttgttcattgccatagtgtacttgaatctctaacctatgctt |
243 |
Q |
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| T |
5689578 |
gttgttcattgccatagtgtacttgaatctctaaccaatgctt |
5689536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 5680304 - 5680248
Alignment:
| Q |
125 |
aaaaatgaaagacctgattatttttggcgcatgagaccaatggaagaaggagaagga |
181 |
Q |
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|||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||| |
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| T |
5680304 |
aaaaatgaaagacctgattattattggtgcatgacaccaatggaagaaggagcagga |
5680248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 5680448 - 5680406
Alignment:
| Q |
11 |
tattgtgctctccaaattccactagataaacctgtgagaaaat |
53 |
Q |
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| T |
5680448 |
tattgttctctccaagttcaactagataaacctgtgagaaaat |
5680406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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