View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233_low_7 (Length: 249)
Name: NF10233_low_7
Description: NF10233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 16791136 - 16790982
Alignment:
| Q |
89 |
actgacctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattaca---attattgatgcattttcatgagcaagatagtgacttgcaat |
185 |
Q |
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| T |
16791136 |
actgacctttattgttcttgaaggtgaagtcttgccactaaagtatttaaattacatttattattgatgcattttcatgagcaagatagtgacttgcaat |
16791037 |
T |
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| Q |
186 |
tatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgc |
240 |
Q |
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| T |
16791036 |
tatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgc |
16790982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 246
Target Start/End: Complemental strand, 16793045 - 16792888
Alignment:
| Q |
92 |
gacctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaat---tattgatgcattttcatgagcaagatagtgacttgcaattat |
188 |
Q |
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| T |
16793045 |
gacctttattgttctcgaaggcgaagtcttgccactaaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattat |
16792946 |
T |
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| Q |
189 |
ttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcc |
246 |
Q |
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| T |
16792945 |
ttgttcccacaggatggaaaaagcctcgcagcttttttgcaaccacttttggtactcc |
16792888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 16791272 - 16791184
Alignment:
| Q |
2 |
tgattgatcattctgacattttgcttggatcgatgagttgggaccaaaggaaaggaaaatcatcataaaaacatgaagttgccatagac |
90 |
Q |
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| T |
16791272 |
tgattgatcattctgacattttgcttggatcgatgagttgggaccaaaggaaaggaaaatcatcataaaaacaagaagttgccatagac |
16791184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 16617353 - 16617254
Alignment:
| Q |
147 |
tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcc |
246 |
Q |
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| T |
16617353 |
tattgatgtattttcatcagcaagattatgacttgcaatgatttgttcccacaggatggaaaatgcctcgcagctttgttgcaaccacctttgatactcc |
16617254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 246
Target Start/End: Complemental strand, 16629734 - 16629578
Alignment:
| Q |
93 |
acctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatt |
189 |
Q |
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| T |
16629734 |
acctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaatgatt |
16629635 |
T |
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| Q |
190 |
tgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcc |
246 |
Q |
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| T |
16629634 |
tgttcccacaggatggaaaatgcgtcccgtctttgatccaaccacctttgatactcc |
16629578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 246
Target Start/End: Complemental strand, 16638615 - 16638459
Alignment:
| Q |
93 |
acctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatt |
189 |
Q |
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| T |
16638615 |
acctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaatgatt |
16638516 |
T |
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| Q |
190 |
tgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcc |
246 |
Q |
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| T |
16638515 |
tgttcccacaggatggaaaatgcgtcccgtctttgatccaaccacctttgatactcc |
16638459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 15110408 - 15110451
Alignment:
| Q |
195 |
ccacaggatagaaaatgcctcgcagctttgttgcaaccaccttt |
238 |
Q |
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| T |
15110408 |
ccacaggatggaaaatgcatcgcagctttgttgcaaccaccttt |
15110451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 16629369 - 16629270
Alignment:
| Q |
147 |
tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcc |
246 |
Q |
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| T |
16629369 |
tattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaatatgcgtcgcgtctttgatccaaccgcctttggtactcc |
16629270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 16638250 - 16638151
Alignment:
| Q |
147 |
tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgctactcc |
246 |
Q |
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| T |
16638250 |
tattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaatatgcgtcgcgtctttgatccaaccgcctttggtactcc |
16638151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 38877856 - 38877741
Alignment:
| Q |
124 |
cactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagc |
220 |
Q |
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| T |
38877856 |
cactaaagtgtttaatttacatttgacattgatgcatgttcatcagcaagattctgacttgtaatgatttactcccacagcatggaaaatgcctcacagc |
38877757 |
T |
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| Q |
221 |
tttgttgcaaccacct |
236 |
Q |
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|||||||||||||||| |
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| T |
38877756 |
tttgttgcaaccacct |
38877741 |
T |
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