View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233_low_8 (Length: 236)

Name: NF10233_low_8
Description: NF10233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233_low_8
NF10233_low_8
[»] chr5 (4 HSPs)
chr5 (1-236)||(10298249-10298484)
chr5 (172-236)||(9747154-9747218)
chr5 (90-162)||(9747249-9747320)
chr5 (1-70)||(10290131-10290200)
[»] chr2 (3 HSPs)
chr2 (41-111)||(16021964-16022034)
chr2 (83-165)||(14117731-14117814)
chr2 (172-224)||(33599016-33599068)
[»] chr4 (2 HSPs)
chr4 (48-134)||(51978594-51978683)
chr4 (47-106)||(3929573-3929630)
[»] chr1 (3 HSPs)
chr1 (175-226)||(36033560-36033611)
chr1 (57-106)||(16119091-16119140)
chr1 (56-145)||(21623678-21623767)
[»] chr7 (2 HSPs)
chr7 (176-226)||(48522878-48522928)
chr7 (174-226)||(46392597-46392649)
[»] scaffold0187 (1 HSPs)
scaffold0187 (173-226)||(4567-4620)
[»] scaffold0062 (1 HSPs)
scaffold0062 (172-212)||(332-372)
[»] chr8 (1 HSPs)
chr8 (49-97)||(9706796-9706844)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 10298249 - 10298484
Alignment:
Q  1 tcatagtcaacaggtaaaaatattccgtccgttccttcttattgtcgttttaagattatttacacataataagaaaactagtaaatttcgttacttttga 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10298249 tcatagtcaacaggtaaaaatactccgtccgttccttcttattgttgttttaatattatttacacataataagaaaactagtaaatttcgttacttttga 10298348  T
Q  101 tgaaatcatttctttttctattatacccttaactttttattatcttgttctatctacttatctctttgcaatattgacaaaataatagttaatgttgcat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10298349 tgaaatcatttctttttctattatacccttaactttttattatcttgttctatctacttatccctttgcaatattgacaaaataatagttaatgttgcat 10298448  T
Q  201 taaaatttaaaaacaacaaataaatatgaaagaatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  10298449 taaaatttaaaaacaacaaataaatatgaaagaatt 10298484  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 9747218 - 9747154
Alignment:
Q  172 tattgacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaatatgaaagaatt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||    
T  9747218 tattgacaaaataatagttaatgttgcattaaaatttaaaaacgacaaataagtatgaacgaatt 9747154  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 9747320 - 9747249
Alignment:
Q  90 gttacttttgatgaaatcatttctttttctattatacccttaactttttattatcttgttctatctacttatc 162  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||    
T  9747320 gttacttttgatgaaattatttctttttctataatacccttaa-tttttattatcttgttccatctatttatc 9747249  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 10290131 - 10290200
Alignment:
Q  1 tcatagtcaacaggtaaaaatattccgtccgttccttcttattgtcgttttaagattatttacacataat 70  Q
    |||| ||||||||| ||||||| | ||| |||||||| ||||| ||||||||| ||||||||||||||||    
T  10290131 tcatggtcaacaggcaaaaatagtacgttcgttcctttttattttcgttttaaaattatttacacataat 10290200  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 16022034 - 16021964
Alignment:
Q  41 attgtcgttttaagattatttacacataataagaaaactagtaaatttcgttacttttgatgaaatcattt 111  Q
    |||||||||||||||||||||||||||| | ||||||| | ||||||| ||||||||| ||| ||| ||||    
T  16022034 attgtcgttttaagattatttacacatactgagaaaaccaataaattttgttactttttatggaattattt 16021964  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 14117814 - 14117731
Alignment:
Q  83 aaatttcgttacttttgatgaaatcatttcttttt-ctattatacccttaactttttattatcttgttctatctacttatctct 165  Q
    |||||| ||||||||||||||||| || ||||||| |||| |||| ||||| | ||||||||||| ||  ||||| ||||||||    
T  14117814 aaattttgttacttttgatgaaattatgtctttttcctataatactcttaagtatttattatcttatttcatctatttatctct 14117731  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 33599016 - 33599068
Alignment:
Q  172 tattgacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaa 224  Q
    ||||||||||||||  ||||||||||||||||| ||| |||| || |||||||    
T  33599016 tattgacaaaataacggttaatgttgcattaaactttgaaaataataaataaa 33599068  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 51978594 - 51978683
Alignment:
Q  48 ttttaagattatttacacataataagaaaactagtaaatttcgttacttttgatgaaatcattt---ctttttctattatacccttaact 134  Q
    ||||||||||||| ||||||| | ||||||||| ||||||| |||||||||||||  || ||||    ||||||||| ||||||||||||    
T  51978594 ttttaagattattgacacatacttagaaaactaataaattttgttacttttgatggtattatttgtcatttttctataatacccttaact 51978683  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 3929573 - 3929630
Alignment:
Q  47 gttttaagattatttacacataataagaaaactagtaaatttcgttacttttgatgaaat 106  Q
    |||||||| ||||||||||||  ||||||||| | ||||||| |||| ||||||||||||    
T  3929573 gttttaagtttatttacacat--taagaaaaccaataaattttgttatttttgatgaaat 3929630  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 36033611 - 36033560
Alignment:
Q  175 tgacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaata 226  Q
    ||||||||||||||||||| ||| |||||| || |||||||| |||||||||    
T  36033611 tgacaaaataatagttaatattgaattaaatttaaaaaacaataaataaata 36033560  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 16119140 - 16119091
Alignment:
Q  57 tatttacacataataagaaaactagtaaatttcgttacttttgatgaaat 106  Q
    ||||||||||||| |||||||  | ||||||| |||||||||||||||||    
T  16119140 tatttacacataacaagaaaaacattaaattttgttacttttgatgaaat 16119091  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 21623767 - 21623678
Alignment:
Q  56 ttatttacacataataagaaaactagtaaatttcgttacttttgatgaaatcatttctttttctattatacccttaactttttattatct 145  Q
    ||||||||||| |  ||||||||   ||||||| ||||||||||||||||   | ||||||||| | |||||||||| | ||||||||||    
T  21623767 ttatttacacaaaccaagaaaaccgataaattttgttacttttgatgaaagtgtgtctttttctttaatacccttaaatatttattatct 21623678  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 48522928 - 48522878
Alignment:
Q  176 gacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaata 226  Q
    |||||||||||| |||||||||||||||| ||||||||  | |||||||||    
T  48522928 gacaaaataataattaatgttgcattaaactttaaaaatgataaataaata 48522878  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 46392597 - 46392649
Alignment:
Q  174 ttgacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaata 226  Q
    ||||||||||  |||||||||||||||| || ||| ||||| |||||||||||    
T  46392597 ttgacaaaatcctagttaatgttgcattgaactttgaaaacgacaaataaata 46392649  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 4567 - 4620
Alignment:
Q  173 attgacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaata 226  Q
    |||| ||| ||||||||||||||| ||| ||| |||||||||||||| ||||||    
T  4567 attgtcaagataatagttaatgttacataaaactttaaaaacaacaattaaata 4620  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 372 - 332
Alignment:
Q  172 tattgacaaaataatagttaatgttgcattaaaatttaaaa 212  Q
    ||||||||| | |||| ||||||||||||||||||||||||    
T  372 tattgacaagacaataattaatgttgcattaaaatttaaaa 332  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 9706844 - 9706796
Alignment:
Q  49 tttaagattatttacacataataagaaaactagtaaatttcgttacttt 97  Q
    |||||| |||||||||||||  |||||||| | ||||||||||||||||    
T  9706844 tttaaggttatttacacataccaagaaaaccaataaatttcgttacttt 9706796  T

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