View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10234_high_1 (Length: 497)

Name: NF10234_high_1
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10234_high_1
NF10234_high_1
[»] chr1 (7 HSPs)
chr1 (154-243)||(2736168-2736257)
chr1 (160-242)||(1076189-1076271)
chr1 (159-241)||(39959841-39959923)
chr1 (161-241)||(1093781-1093861)
chr1 (168-233)||(5298760-5298824)
chr1 (168-233)||(25948209-25948273)
chr1 (168-233)||(47490286-47490350)
[»] chr4 (5 HSPs)
chr4 (161-245)||(33075797-33075881)
chr4 (161-238)||(42678835-42678912)
chr4 (168-233)||(43930118-43930182)
chr4 (165-232)||(55899070-55899137)
chr4 (205-242)||(20144868-20144905)
[»] chr7 (9 HSPs)
chr7 (158-241)||(28556077-28556160)
chr7 (160-241)||(48253855-48253936)
chr7 (161-241)||(47958503-47958583)
chr7 (158-242)||(28545494-28545578)
chr7 (159-242)||(28549910-28549993)
chr7 (159-241)||(24142889-24142971)
chr7 (168-233)||(42617411-42617475)
chr7 (165-245)||(2415880-2415960)
chr7 (188-233)||(46961385-46961430)
[»] chr2 (1 HSPs)
chr2 (159-241)||(36011885-36011967)
[»] chr3 (4 HSPs)
chr3 (159-241)||(21127734-21127816)
chr3 (159-241)||(43291863-43291945)
chr3 (168-233)||(42085063-42085127)
chr3 (154-204)||(21126559-21126609)
[»] scaffold0648 (1 HSPs)
scaffold0648 (168-233)||(7753-7817)
[»] chr8 (1 HSPs)
chr8 (168-233)||(33802591-33802655)
[»] chr5 (2 HSPs)
chr5 (168-233)||(12974260-12974324)
chr5 (168-233)||(40579690-40579754)
[»] chr6 (1 HSPs)
chr6 (165-232)||(30809870-30809937)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 2736168 - 2736257
Alignment:
Q  154 caacaaagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaacaaa 243  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2736168 caacatagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaacaaa 2736257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 1076189 - 1076271
Alignment:
Q  160 agttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaacaa 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1076189 agttgagatggccgagttggtctaaggcgtcagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaacaa 1076271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 39959841 - 39959923
Alignment:
Q  159 aagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaaca 241  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  39959841 aagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 39959923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 1093781 - 1093861
Alignment:
Q  161 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaaca 241  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||  || ||| || |||||||||||| |||||||||    
T  1093781 gttgagatggccgagttggtctaaggcgcccgattaaggttctggtctaaatgggtgtgggttcaaatcccgctctcaaca 1093861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 5298760 - 5298824
Alignment:
Q  168 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccac 233  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  5298760 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 5298824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 25948209 - 25948273
Alignment:
Q  168 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccac 233  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  25948209 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 25948273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 47490350 - 47490286
Alignment:
Q  168 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccac 233  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  47490350 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 47490286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 33075797 - 33075881
Alignment:
Q  161 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaacaaaaa 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33075797 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaacaaaaa 33075881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 42678912 - 42678835
Alignment:
Q  161 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctca 238  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||   |||||||| ||||||||    
T  42678912 gttgagatggccgagttagtctaaggcgccagattaaggttctcgtccgaaagggcgtgaattcaaatcacactctca 42678835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 43930182 - 43930118
Alignment:
Q  168 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccac 233  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  43930182 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 43930118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 55899137 - 55899070
Alignment:
Q  165 agatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatccca 232  Q
    |||||||||||||||||||||||||||| || |||| ||||||||||||||| | ||||| |||||||    
T  55899137 agatggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 55899070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 20144905 - 20144868
Alignment:
Q  205 gtccgaaagggcgtaggttcaaatcccactctcaacaa 242  Q
    ||||||||||| || |||||||||||||||||||||||    
T  20144905 gtccgaaagggtgtgggttcaaatcccactctcaacaa 20144868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 28556077 - 28556160
Alignment:
Q  158 aaagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaaca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28556077 aaagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 28556160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 48253855 - 48253936
Alignment:
Q  160 agttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaaca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48253855 agttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 48253936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 47958583 - 47958503
Alignment:
Q  161 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaaca 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47958583 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 47958503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 28545494 - 28545578
Alignment:
Q  158 aaagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaacaa 242  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  28545494 aaagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaacaa 28545578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 28549910 - 28549993
Alignment:
Q  159 aagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaacaa 242  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  28549910 aagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaacaa 28549993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 24142971 - 24142889
Alignment:
Q  159 aagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaaca 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||    
T  24142971 aagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgatagggtgtgggttcaaatcccactctcaaca 24142889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 42617475 - 42617411
Alignment:
Q  168 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccac 233  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  42617475 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 42617411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 2415880 - 2415960
Alignment:
Q  165 agatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaacaaaaa 245  Q
    |||||||||||||||||||||||||||| || |||| ||||||||||||||| | ||||| ||||||| |||  |||||||    
T  2415880 agatggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatcccattcttgacaaaaa 2415960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 46961385 - 46961430
Alignment:
Q  188 gccagattaaggttctggtccgaaagggcgtaggttcaaatcccac 233  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||||    
T  46961385 gccagattaaggttctggtctgaaaaggcgtgggttcaaatcccac 46961430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 36011885 - 36011967
Alignment:
Q  159 aagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaaca 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36011885 aagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 36011967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 21127816 - 21127734
Alignment:
Q  159 aagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaaca 241  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  21127816 aagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 21127734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 43291945 - 43291863
Alignment:
Q  159 aagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccactctcaaca 241  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  43291945 aagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 43291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 42085127 - 42085063
Alignment:
Q  168 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccac 233  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  42085127 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 42085063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 21126609 - 21126559
Alignment:
Q  154 caacaaagttgagatggccgagttggtctaaggcgccagattaaggttctg 204  Q
    |||||||||||||||| ||||||||| ||||||| || |||||||||||||    
T  21126609 caacaaagttgagatgaccgagttggcctaaggcaccggattaaggttctg 21126559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 7817 - 7753
Alignment:
Q  168 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccac 233  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  7817 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 7753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 33802655 - 33802591
Alignment:
Q  168 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccac 233  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  33802655 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 33802591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 12974260 - 12974324
Alignment:
Q  168 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccac 233  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  12974260 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 12974324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 40579690 - 40579754
Alignment:
Q  168 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatcccac 233  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  40579690 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 40579754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 30809937 - 30809870
Alignment:
Q  165 agatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtaggttcaaatccca 232  Q
    |||||||||||||||||||||||||||| || |||| ||||||||||||||| | ||||| |||||||    
T  30809937 agatggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 30809870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University