View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10234_high_14 (Length: 239)

Name: NF10234_high_14
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10234_high_14
NF10234_high_14
[»] chr5 (10 HSPs)
chr5 (18-239)||(39475972-39476193)
chr5 (18-239)||(39483723-39483944)
chr5 (18-200)||(39486970-39487152)
chr5 (54-187)||(39460765-39460898)
chr5 (25-229)||(39457788-39457992)
chr5 (58-180)||(39451525-39451647)
chr5 (25-235)||(39464050-39464260)
chr5 (58-214)||(39455118-39455274)
chr5 (61-214)||(39470288-39470441)
chr5 (76-144)||(39472591-39472659)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 39476193 - 39475972
Alignment:
Q  18 taataaaggtcccaccggatatatcagtatatccgatagatcaggatgagagaaaaaagagtgaaccgcatgtgattctagctcttcaaatgagtttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39476193 taataaaggtcccaccggatatatcagtatatccgatagatcaggatgagagaaaaaagagtgaaccgcatgtgattctagctcttcaaatgagtttact 39476094  T
Q  118 ataatgccatttactttcttgaggcctcttgcaagtctcatgaaaaacgattcccattccttgtgtagcacaaaactgggcaatgattttgaaggaacgg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39476093 ataatgccatttactttcttgaggcctcttgcaagtctcatgaaaaacgactcccattccttgtgtagcacaaaactgggcaatgattttgaaggaacgg 39475994  T
Q  218 ggttggcgaaactcgggatggc 239  Q
    ||||||||||||||||||||||    
T  39475993 ggttggcgaaactcgggatggc 39475972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 39483944 - 39483723
Alignment:
Q  18 taataaaggtcccaccggatatatcagtatatccgatagatcaggatgagagaaaaaagagtgaaccgcatgtgattctagctcttcaaatgagtttact 117  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| || ||||||||||||| |||||| ||||||    
T  39483944 taataaaggtcccaccggatatatctgtatatccgatagatctggatgagtgaaaaaagagtgaaccgcgtgagattctagctcttaaaatgaatttact 39483845  T
Q  118 ataatgccatttactttcttgaggcctcttgcaagtctcatgaaaaacgattcccattccttgtgtagcacaaaactgggcaatgattttgaaggaacgg 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |  |||| ||| |||| | ||||||| || |||||||  |||||||||| ||    
T  39483844 ataatgccatttactttcttgaggcctcttgcaaggctcatgaaaaatggctcccgttctttgtttcgcacaaagctaggcaatggatttgaaggaatgg 39483745  T
Q  218 ggttggcgaaactcgggatggc 239  Q
    ||||||| ||||||||||||||    
T  39483744 ggttggcaaaactcgggatggc 39483723  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 39487152 - 39486970
Alignment:
Q  18 taataaaggtcccaccggatatatcagtatatccgatagatcaggatgagagaaaaaagagtgaaccgcatgtgattctagctcttcaaatgagtttact 117  Q
    |||||| |||||||| ||||||| | |||  || | ||||||||||||||||||||| || ||||| ||||||||||||| |||||||||||| ||||||    
T  39487152 taataagggtcccactggatataccggtaattctgctagatcaggatgagagaaaaaggattgaacagcatgtgattctaactcttcaaatgaatttact 39487053  T
Q  118 ataatgccatttactttcttgaggcctcttgcaagtctcatgaaaaacgattcccattccttgtgtagcacaaaactgggcaa 200  Q
    |||||| ||||| |||| |||| ||| |  ||||   ||||||||||||||||  |||||||||||||||  |||||||||||    
T  39487052 ataatggcatttgcttttttgatgccaccggcaaagttcatgaaaaacgattcatattccttgtgtagcaggaaactgggcaa 39486970  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 39460898 - 39460765
Alignment:
Q  54 tagatcaggatgagagaaaaaagagtgaaccgcatgtgattctagctcttcaaatgagtttactataatgccatttactttcttgaggcctcttgca-ag 152  Q
    ||||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||||| |  ||| ||    
T  39460898 tagatcagggtgagagaaaaatgattgaactgcatgggattctagctcttcaaatgaatttactataataccatttgctttcttgaggccaccagcatag 39460799  T
Q  153 tctcatgaaaaacgattcccattccttgtgtagca 187  Q
    | |||| ||||| |||||||||||||||| |||||    
T  39460798 t-tcataaaaaaggattcccattccttgtttagca 39460765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 39457788 - 39457992
Alignment:
Q  25 ggtcccaccggatatatcagtatatccgatagatcaggatgagagaaaaaagagtgaaccgcatgtgattctagctcttcaaatgagtttactataatgc 124  Q
    ||||| |||||||||||  ||| | | | ||||||||||||||||| ||| |||||||| ||||  |||||||||||||||||||| ||||| ||||||     
T  39457788 ggtcctaccggatatatgggtaaacctgctagatcaggatgagagacaaaggagtgaacggcataggattctagctcttcaaatgaatttacaataatgg 39457887  T
Q  125 catttactttcttgaggcctcttgcaagtctcatgaaaaacgattcccattccttgtgtagcacaaaactgggcaatgattttgaaggaacggggttggc 224  Q
    |||   | |||||||| ||| | |||   |||||||| || || |||||||||||| |||||||  |||||||||| |  ||||||||||| | ||| ||    
T  39457888 catcagcattcttgagacctttcgcatagctcatgaagaaggactcccattccttgcgtagcactgaactgggcaaagtgtttgaaggaactgagttagc 39457987  T
Q  225 gaaac 229  Q
    |||||    
T  39457988 gaaac 39457992  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 39451647 - 39451525
Alignment:
Q  58 tcaggatgagagaaaaaagagtgaaccgcatgtgattctagctcttcaaatgagtttactataatgccatttactttcttgaggcc-tcttgcaagtctc 156  Q
    |||||||||  |||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||   | ||||||||||| |||   ||| |||    
T  39451647 tcaggatgattgaaaaaggagtgaaccgcgtgtgattctagctcttcaaatgaatttactataatgccatcggcattcttgaggccttctatgaag-ctc 39451549  T
Q  157 atgaaaaacgattcccattccttg 180  Q
    |||||||||| |||||||||||||    
T  39451548 atgaaaaacggttcccattccttg 39451525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 39464050 - 39464260
Alignment:
Q  25 ggtcccaccggatatatcagtatatccgatagatcaggatgagagaaaaaagagtgaaccgcatgtgattctagctcttcaaatgagtttactataatgc 124  Q
    |||||||| ||||||||| ||| | | | ||||  || || ||| ||||| || ||||| ||||| |||||||||||||||||||| ||||||||||  |    
T  39464050 ggtcccacaggatatatccgtaaaccagctagaatagtatcagataaaaatgaatgaactgcatgggattctagctcttcaaatgaatttactataaaac 39464149  T
Q  125 catttactttcttgaggcctcttgcaagtctcatgaaaaacgattcccattccttgtgtagcacaaaactgggcaatgattttgaaggaacggggttggc 224  Q
    |||   | |||||||||||| |||||   |||||||||||||| ||  |||||||| |||  ||   ||||||||| ||||||| |||||||| ||| ||    
T  39464150 catcagccttcttgaggccttttgcatagctcatgaaaaacgactcggattccttgcgtattactgcactgggcaacgattttgtaggaacggagttagc 39464249  T
Q  225 gaaactcggga 235  Q
    |||||||||||    
T  39464250 gaaactcggga 39464260  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 39455274 - 39455118
Alignment:
Q  58 tcaggatgagagaaaaaagagtgaaccgcatgtgattctagctcttcaaatgagtttactataatgccatttactttcttgaggcctcttgcaagtctca 157  Q
    ||||||||||||||||| |||||||||||||| ||||| || ||||||||||| |||||||| || ||||   | ||||||||||||||||||   |||     
T  39455274 tcaggatgagagaaaaaggagtgaaccgcatgagattcaagatcttcaaatgaatttactatgattccatcggcattcttgaggcctcttgcatagctct 39455175  T
Q  158 tgaaaaacgattcccattccttgtgtagcacaaaactgggcaatgattttgaaggaa 214  Q
    |||||| || || ||||||||||  |||||   |||  |||||||| ||||||||||    
T  39455174 tgaaaaccggtttccattccttgcttagcagggaacgtggcaatgagtttgaaggaa 39455118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 214
Target Start/End: Original strand, 39470288 - 39470441
Alignment:
Q  61 ggatgagagaaaaaagagtgaaccgcatgtgattctagctcttcaaatgagtttactataatgccatttactttcttgaggcctcttgcaagtctcatga 160  Q
    |||||||||||||| |||||||||||||  |||||||||||||||||||| || || ||||||||||   | |||||||||||| | || |  |||||||    
T  39470288 ggatgagagaaaaaggagtgaaccgcataggattctagctcttcaaatgaattgacaataatgccatcggcattcttgaggcctttggcgaagctcatga 39470387  T
Q  161 aaaacgattcccattccttgtgtagcacaaaactgggcaatgattttgaaggaa 214  Q
    | |  ||||   ||||||||||||||||  |||||||||| || ||| ||||||    
T  39470388 agacggatttgtattccttgtgtagcactgaactgggcaacgagtttaaaggaa 39470441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 39472659 - 39472591
Alignment:
Q  76 gagtgaaccgcatgtgattctagctcttcaaatgagtttactataatgccatttactttcttgaggcct 144  Q
    |||||||| || || |||||||||||||||||||| |||||||||| |||||   | ||||||||||||    
T  39472659 gagtgaactgcgtgggattctagctcttcaaatgaatttactataaagccatcagcgttcttgaggcct 39472591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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