View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10234_high_17 (Length: 229)
Name: NF10234_high_17
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 812055 - 811836
Alignment:
| Q |
7 |
cactcctcatcaactttgtatttctgtaaggctagtttgttatattcactataaagtagctttcactatcaacctcaataaggaagactaaggaacaaca |
106 |
Q |
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| T |
812055 |
cactcctcatcaactttgtatttct--aaggctagtttgctatattcactataaagtagctttcactatcaacctcaataaggaagactaaggaacaaca |
811958 |
T |
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| Q |
107 |
aaaactaccatctcaacagcttcaaatagacatcttaccaataaaaagcttatccttacttctttaggaagaaaaacaaagaatatatatataggccaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
811957 |
aaaactaccatctcaacagcttcaaatagacatcttaccaataaaaagcttatccttacttctttaggaa-aaaaacaaagaatctatatataggccaat |
811859 |
T |
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| Q |
207 |
gcattcttaccccactaccctac |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
811858 |
gcattcttaccccactaccctac |
811836 |
T |
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