View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10234_high_18 (Length: 226)

Name: NF10234_high_18
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10234_high_18
NF10234_high_18
[»] chr4 (4 HSPs)
chr4 (1-224)||(20681717-20681940)
chr4 (99-219)||(23573638-23573758)
chr4 (47-186)||(23383343-23383479)
chr4 (167-219)||(53664212-53664264)
[»] chr5 (1 HSPs)
chr5 (15-219)||(43589006-43589210)
[»] chr2 (2 HSPs)
chr2 (30-219)||(6852668-6852857)
chr2 (171-220)||(6851911-6851960)
[»] chr3 (2 HSPs)
chr3 (32-180)||(11267552-11267695)
chr3 (101-186)||(50305398-50305483)
[»] chr7 (2 HSPs)
chr7 (171-221)||(46814247-46814297)
chr7 (171-219)||(5004188-5004236)
[»] chr6 (1 HSPs)
chr6 (97-186)||(29290156-29290245)
[»] chr1 (3 HSPs)
chr1 (171-220)||(38618229-38618278)
chr1 (171-219)||(50354996-50355044)
chr1 (171-219)||(24976719-24976767)
[»] chr8 (3 HSPs)
chr8 (167-219)||(33802369-33802421)
chr8 (167-221)||(38686301-38686355)
chr8 (167-219)||(33801499-33801551)
[»] scaffold2003 (1 HSPs)
scaffold2003 (97-141)||(669-713)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 20681940 - 20681717
Alignment:
Q  1 cagtgcaattgagaagtgtgtttgatgttggtgatggtgatggcggtggtggtagtaagtgagtgggacatggaagagagaggatggagaggaaggtagt 100  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  20681940 cagtgcaattgagaagtgtgtttcatgttggtggtggtgatggcggtggtggtagtaggtgagtgagacatggaagagagaggatggagaggaaggtagt 20681841  T
Q  101 gtaaaaataatctagtgctgatggagtatgataagagtgtactctccaattaatccaacagttaaaatttactttcccatagtgggtaagaattcctcct 200  Q
    |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20681840 gtaaaaatgatctagtgttaatggagtatgataagagtgtactctccaattaatccaacagttaaaatttactttcccatagtgggaaagaattcctcct 20681741  T
Q  201 gcccatcctaaatgccacccatat 224  Q
     |||| ||||||||||||| ||||    
T  20681740 acccaccctaaatgccacctatat 20681717  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 23573758 - 23573638
Alignment:
Q  99 gtgtaaaaataatctagtgctgatggagtatgataagagtgtactctccaattaatccaacagttaaaatttactttcccatagtgggtaagaattcctc 198  Q
    ||||||||||||| ||||| ||||| |||||||||||| ||||||||||| ||||| |||||||||||||||||||||  |||||||| |||||||||||    
T  23573758 gtgtaaaaataatatagtgatgatgaagtatgataagaatgtactctccatttaattcaacagttaaaatttactttcttatagtgggaaagaattcctc 23573659  T
Q  199 ctgcccatcctaaatgccacc 219  Q
    |  |||| |||||||||||||    
T  23573658 cgacccaacctaaatgccacc 23573638  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 23383479 - 23383343
Alignment:
Q  47 tggtggtagtaagtgagtggg-acatggaagagagaggatggagaggaaggtagtgtaaaaat-aatctagtgctgatggagtatgataagagtgtactc 144  Q
    ||||||| ||| ||||||||| |||||||||||||||| ||||     || |||||||||||| ||||||||  ||||||||||||||||||||||  ||    
T  23383479 tggtggtggtaggtgagtggggacatggaagagagagggtgga-----agatagtgtaaaaattaatctagtattgatggagtatgataagagtgtgttc 23383385  T
Q  145 tccaattaatccaacagttaaaatttactttcccatagtggg 186  Q
    | || || ||| ||  | ||||||| |||||||||| |||||    
T  23383384 ttcatttgatcgaatggataaaattaactttcccatggtggg 23383343  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 53664264 - 53664212
Alignment:
Q  167 atttactttcccatagtgggtaagaattcctcctgcccatcctaaatgccacc 219  Q
    |||||||||||||| ||||| |||||||||| || |||| ||||||| |||||    
T  53664264 atttactttcccatggtgggaaagaattccttctacccaccctaaataccacc 53664212  T

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Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 43589006 - 43589210
Alignment:
Q  15 agtgtgtttgatgttggtgatggtgatggcggtggtggtagtaagtgagtgggacatggaagagagaggatggagaggaaggtagtgtaaaaataatcta 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43589006 agtgtgtttgatgttggtggtggtgatggcggtggtggtagtaggtgagtgggacatggaagagagaggatggagaggaaggtagtgtaaaaatgatcta 43589105  T
Q  115 gtgctgatggagtatgataagagtgtactctccaattaatccaacagttaaaatttactttcccatagtgggtaagaattcctcctgcccatcctaaatg 214  Q
    | | |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||    
T  43589106 gagttgatggagtatgataagactgtactctccaattaatccaacagttaaaatctactttcccatagtgggaaagaattcctcctacccaccctaaatg 43589205  T
Q  215 ccacc 219  Q
    |||||    
T  43589206 ccacc 43589210  T

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Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 6852668 - 6852857
Alignment:
Q  30 ggtgatggtgatggcggtggtggtagtaagtgagtgggacatggaagagagaggatggagaggaaggtagtgtaaaaataatctagtgctgatggagtat 129  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||| ||| |||||||||||| |||||||| |||||||||||    
T  6852668 ggtggtggtgatggcagtggtggtagtaggtgagtgagacatggaagagagaggatgaagagaaagatagtgtaaaaatgatctagtgttgatggagtat 6852767  T
Q  130 gataagagtgtactctccaattaatccaacagttaaaatttactttcccatagtgggtaagaattcctcctgcccatcctaaatgccacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| |||| |||||||||||||    
T  6852768 gataagagtgtactctccaattaatccaacagttaaaatttactttcctatggtgggaaagaattcctcctacccaccctaaatgccacc 6852857  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 6851960 - 6851911
Alignment:
Q  171 actttcccatagtgggtaagaattcctcctgcccatcctaaatgccaccc 220  Q
    ||||||||||  |||| ||||||||||||| |||| ||||||||||||||    
T  6851960 actttcccatgatgggaaagaattcctcctacccaccctaaatgccaccc 6851911  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 11267552 - 11267695
Alignment:
Q  32 tgatggtgatggcggtggtggtagtaagtgagtgggacatggaagagagaggatggagaggaaggtagtgtaaaaa-taatctagtgctgatggagtatg 130  Q
    ||||| || ||||||||||| | ||  |||||||||||||||||||||||||       ||||| ||||||||||| |||| ||||| ||||||||||||    
T  11267552 tgatgttggtggcggtggtgattgtgggtgagtgggacatggaagagagaggg------ggaagatagtgtaaaaaataatatagtggtgatggagtatg 11267645  T
Q  131 ataagagtgtactctccaattaatccaacagttaaaatttactttcccat 180  Q
    |||||||| | ||||  | |||||| ||  ||||||||||| ||||||||    
T  11267646 ataagagtatgctctttatttaatctaatggttaaaatttattttcccat 11267695  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 50305398 - 50305483
Alignment:
Q  101 gtaaaaataatctagtgctgatggagtatgataagagtgtactctccaattaatccaacagttaaaatttactttcccatagtggg 186  Q
    |||| |||||| ||||| | |||||||||||||||||| | |||| || | |||| ||  ||||||||||||||| |||| |||||    
T  50305398 gtaagaataatatagtgttcatggagtatgataagagtatgctcttcattcaatctaatggttaaaatttacttttccatggtggg 50305483  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 46814247 - 46814297
Alignment:
Q  171 actttcccatagtgggtaagaattcctcctgcccatcctaaatgccaccca 221  Q
    |||||||||| ||||| ||||||||||||| |||||||||||| |||||||    
T  46814247 actttcccatggtgggaaagaattcctcctacccatcctaaataccaccca 46814297  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 5004236 - 5004188
Alignment:
Q  171 actttcccatagtgggtaagaattcctcctgcccatcctaaatgccacc 219  Q
    |||||||||| ||||  ||||||||||||| ||||||||||||| ||||    
T  5004236 actttcccatggtggaaaagaattcctcctacccatcctaaatgtcacc 5004188  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 29290245 - 29290156
Alignment:
Q  97 tagtgtaaaaataatctagtgctgatggagtatgataagagtgtactctccaattaatccaacagttaaaatttactttcccatagtggg 186  Q
    |||||| ||| |||||||||| ||| ||||||||||||||||||| |||  | ||||||| |  ||||| ||| |||||||||| |||||    
T  29290245 tagtgtgaaattaatctagtgttgaaggagtatgataagagtgtattctttatttaatcccatggttaacattaactttcccatggtggg 29290156  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 38618278 - 38618229
Alignment:
Q  171 actttcccatagtgggtaagaattcctcctgcccatcctaaatgccaccc 220  Q
    |||||||||| ||||| ||||||||||||| |||| ||||||||||||||    
T  38618278 actttcccatggtgggaaagaattcctcctacccaccctaaatgccaccc 38618229  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 50354996 - 50355044
Alignment:
Q  171 actttcccatagtgggtaagaattcctcctgcccatcctaaatgccacc 219  Q
    |||||||||| ||||| ||||||||||||| |||| |||||||||||||    
T  50354996 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 50355044  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 24976719 - 24976767
Alignment:
Q  171 actttcccatagtgggtaagaattcctcctgcccatcctaaatgccacc 219  Q
    |||||||||| ||||  ||||||||||||| |||| |||||||||||||    
T  24976719 actttcccatggtggaaaagaattcctcctacccaccctaaatgccacc 24976767  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 33802369 - 33802421
Alignment:
Q  167 atttactttcccatagtgggtaagaattcctcctgcccatcctaaatgccacc 219  Q
    |||||||||||||| ||||| |||||||||| || |||| |||||||||||||    
T  33802369 atttactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 33802421  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 38686355 - 38686301
Alignment:
Q  167 atttactttcccatagtgggtaagaattcctcctgcccatcctaaatgccaccca 221  Q
    |||||||||||||| ||||  |||||||||| || |||| |||||||||||||||    
T  38686355 atttactttcccatggtggaaaagaattccttctacccaccctaaatgccaccca 38686301  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 33801551 - 33801499
Alignment:
Q  167 atttactttcccatagtgggtaagaattcctcctgcccatcctaaatgccacc 219  Q
    ||||||||| |||| ||||| |||||||||| || |||| |||||||||||||    
T  33801551 atttacttttccatggtgggaaagaattccttctacccaccctaaatgccacc 33801499  T

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Target: scaffold2003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 713 - 669
Alignment:
Q  97 tagtgtaaaaataatctagtgctgatggagtatgataagagtgta 141  Q
    |||||| ||| |||||||||| ||| |||||||||||||||||||    
T  713 tagtgtgaaattaatctagtgttgaaggagtatgataagagtgta 669  T

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