View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10234_high_20 (Length: 221)
Name: NF10234_high_20
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 52249825 - 52249627
Alignment:
| Q |
1 |
catctgcaatctatacaaaaatagtcaaaaacactaactgaatcgacaannnnnnnctaaacggtgaactttttaatcgatatgatactgtattattata |
100 |
Q |
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| T |
52249825 |
catctgcaatctatacaaaaatagtcaaaaacactaactgaatcgacaattttta-ctaaacggtgaactttttaatcgatatgatactgtattattata |
52249727 |
T |
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| Q |
101 |
tttgtcaattgttaaacgatggtcgttaatagccataaaaagtggtttgaaacgtggtttttaagaaaatgattgataaaacccgagataactttccgtt |
200 |
Q |
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| T |
52249726 |
tttgtcaattgttaaacgatggtcgttaatagccataaaaagtgatttgaaacgtggtttttaagaaaatgattgataaaacccgagataactttccgtt |
52249627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 41120244 - 41120107
Alignment:
| Q |
26 |
caaaaacactaactgaatcgacaannnnnnnctaaacggtgaactttttaatcgatatgatactgtattatta-tatttgtcaattgttaaacgatggtc |
124 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||| ||| || |||||| ||||| ||||||||||||||||||| ||||| |
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| T |
41120244 |
caaaaacactaactgaatcgaca-ttttttactaaaccgtgaactttttaatcaatacgagactgtactattactatttgtcaattgttaaaccatggtt |
41120146 |
T |
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| Q |
125 |
gttaatagccataaaaagtggtttgaaacgtggtttttaa |
164 |
Q |
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| T |
41120145 |
gttta-agccataagaagtagtttgaaacgtagtttttaa |
41120107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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