View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10234_high_22 (Length: 212)

Name: NF10234_high_22
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10234_high_22
NF10234_high_22
[»] chr1 (2 HSPs)
chr1 (13-196)||(51319801-51319984)
chr1 (13-196)||(51343805-51343991)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 51319984 - 51319801
Alignment:
Q  13 aagaatccagaattggtatggattaaaggccatgaagaacagttaccaattcaattggcttccttagctggacaacttcatatggtgaagtttttgtttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51319984 aagaatccagaattggtatggattaaaggccatgaagaacagttaccaattcaattggcttccttagctggacaacttcatatggtgaagtttttgtttc 51319885  T
Q  113 aaaggattgaacaagacaacaacattaacttaccatttcaagatataatcaaactatttttcttgaccctgaccaacaacattt 196  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51319884 aaaggattgaacaagacaacaacattaatttaccatttcaagatataatcaaactatttttcttgaccctgaccaacaacattt 51319801  T

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Target: chr1; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 51343991 - 51343805
Alignment:
Q  13 aagaatccagaattggtatggattaaaggccatgaagaacagttaccaattcaattggcttccttagctggacaacttcatatggtgaagtttttgtttc 112  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||| ||| || ||||||||||||||| ||||||||||||    
T  51343991 aagaatccagaattggtatggattaaaggtcatgaagaaaagttgccaattcaattggcatcctcagccgggcaacttcatatggtggagtttttgtttc 51343892  T
Q  113 aaaggattgaacaagacaacaacattaact---taccatttcaagatataatcaaactatttttcttgaccctgaccaacaacattt 196  Q
    |||||||| |||||  |||||||||||| |   ||||||||||||||||  |||| ||||||||||||||||| |||||||||||||    
T  51343891 aaaggattcaacaattcaacaacattaatttactaccatttcaagatattgtcaatctatttttcttgacccttaccaacaacattt 51343805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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