View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10234_high_4 (Length: 355)
Name: NF10234_high_4
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 2698983 - 2698653
Alignment:
| Q |
18 |
agcaagagtatcttctatagtgatcaataattaaggtatattatattcaaaaattacgatcaacgatatatgcttgattagttaaaattatagtaaaagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2698983 |
agcaagagtatcttctatagtgatcaataattaaggtatattatattcaaaaattatgatcaatgatatatgcttgattagttaaaattatagtaaaagt |
2698884 |
T |
|
| Q |
118 |
taaataataaaagccataaagtcaatttgaaatatttttattttcactatatttttacattgata--gagatacgtaaggtgttcttttatgtggttggc |
215 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |
|
|
| T |
2698883 |
taaacaataaaagccacaaagtcaatttgaaatatttttattttcactatatttttacattgatagagagatatgtaatgtgttcttttatgtggttggc |
2698784 |
T |
|
| Q |
216 |
aaatgagaattgaattgttcaatttggtacagatcactattggaccatttatcacctagta-atagtatatatatgaaacctttgagattttgaaaattc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2698783 |
aaatgagaattgaattgttcaatttggtacagatcactattggaccatttatcacctagtatata-tatatatatgaaacctttgagattttgaaaattc |
2698685 |
T |
|
| Q |
315 |
agtttatatttaattgtgaacaaaatatccta |
346 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
|
|
| T |
2698684 |
agtttatatttaattgagaacaaaatatccta |
2698653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 10840121 - 10840077
Alignment:
| Q |
281 |
tatatatatgaaacctttgagattttgaaaattcagtttatattt |
325 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||| |
|
|
| T |
10840121 |
tatatatatcaaacctttgagattttgaatcttcaatttatattt |
10840077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University