View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10234_high_6 (Length: 295)

Name: NF10234_high_6
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10234_high_6
NF10234_high_6
[»] chr4 (7 HSPs)
chr4 (7-237)||(4337083-4337313)
chr4 (7-237)||(4319177-4319416)
chr4 (18-224)||(4122538-4122747)
chr4 (7-123)||(4132616-4132729)
chr4 (16-236)||(4346553-4346779)
chr4 (173-230)||(4132515-4132572)
chr4 (16-123)||(4362742-4362849)
[»] chr6 (7 HSPs)
chr6 (7-123)||(5065447-5065563)
chr6 (8-118)||(5253715-5253825)
chr6 (7-123)||(5126627-5126743)
chr6 (17-123)||(5177930-5178036)
chr6 (17-123)||(5279755-5279861)
chr6 (7-123)||(5346210-5346326)
chr6 (17-123)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (7-123)||(36212919-36213035)
[»] chr3 (2 HSPs)
chr3 (7-111)||(47985403-47985507)
chr3 (7-111)||(48003977-48004081)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 4337083 - 4337313
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337083 tgaggagtggcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 4337182  T
Q  107 tatctcatatatcatgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337183 tatctcatatatcatgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 4337282  T
Q  207 tctctcttcaagtagagcctgcagatgattt 237  Q
    |||||||||||||||||||||||||||||||    
T  4337283 tctctcttcaagtagagcctgcagatgattt 4337313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 4319416 - 4319177
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||  ||||||||| ||| ||||||||||||||||||| || || ||||||||||| ||||||||||||||||  |||||||||| |||| |||||    
T  4319416 tgaggagtggcagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtt 4319317  T
Q  107 tatctcatatatcatga---------cgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctg 197  Q
    |||||||||||| ||||         ||||| ||| |||||||||||| |||||||| |||||||||| ||||| |  |||||| |||||||||||||||    
T  4319316 tatctcatatatgatgaaccagtcgtcgaaatattggagcaatgtcatacaccagataagaatgttcttgttgatatcggtgatgaaaatgaatgtgctg 4319217  T
Q  198 ccaagaggatctctcttcaagtagagcctgcagatgattt 237  Q
    ||| |||||||||||  |||||||||||| ||||||||||    
T  4319216 ccatgaggatctctcgccaagtagagcctacagatgattt 4319177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 4122747 - 4122538
Alignment:
Q  18 agagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatata 117  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||  |||||||||| |||| ||||||||||||||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  118 tcatga---------cgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagaggatc 208  Q
    | ||||          |||||| | |||||||| ||||||||| || ||||||||   ||||   |||||| | |||||||||| |||||||||||| ||    
T  4122647 tgatgaaccaatcggtgaaaaaatagagcaatgccatgcaccaaataagaatgtt---gttg---gtggtgctgaaaatgaatgcgctgccaagagggtc 4122554  T
Q  209 tctcttcaagtagagc 224  Q
    ||||| ||||||||||    
T  4122553 tctctgcaagtagagc 4122538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 4132729 - 4132616
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||  ||||||||| ||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||  |||||||||| |||| |||||    
T  4132729 tgaggagtggcagagagtagtatcaaatatggaacctggtgacaaagtcgagattgt---tgtttttgggaacagtttcattgtgatgaagacagcagtt 4132633  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  4132632 tatctcatatatgatga 4132616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 4346553 - 4346779
Alignment:
Q  16 gcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcata 115  Q
    ||||||| || |||| ||||||||||||||||| ||||| ||||| ||||||||| | | ||||| |   ||||||| || |||| ||||||||||||||    
T  4346553 gcagagaatgatatcgaatatggaacctggtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagacagcagtttatctcata 4346652  T
Q  116 tatca---------tgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 206  Q
    ||| |         |||||||||| | || || ||| |||||||||||  ||||||| | ||||   |||||||| ||||||||||  || |||||||||    
T  4346653 tatgatgaaccaattgacgaaaaaatagaccattgtgatgcaccagatatgaatgttattgttg---gtggtgatgaaaatgaatgctcttccaagagga 4346749  T
Q  207 tctctcttcaagtagagcctgcagatgatt 236  Q
    | |||| |||||||||| |  |||||||||    
T  4346750 tttctcctcaagtagagtccacagatgatt 4346779  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 4132572 - 4132515
Alignment:
Q  173 agtggtgataaaaatgaatgtgctgccaagaggatctctcttcaagtagagcctgcag 230  Q
    ||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  4132572 agtggtgatgaaaatgaatgtgctgccaagaggttcactcttcaagtagagcccgcag 4132515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 4362742 - 4362849
Alignment:
Q  16 gcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcata 115  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||| ||||  | | ||||| |   ||||||| || |||| ||||||||||||||    
T  4362742 gcagagagtgatatcaaatatggaacctggtgacaaagtggagatagttattgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcata 4362841  T
Q  116 tatcatga 123  Q
    ||| ||||    
T  4362842 tatgatga 4362849  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 5065563 - 5065447
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| ||||||||| ||||||| ||| ||||||||  ||||||| ||  ||||||||||||||| |||| |||   |||||| |||||||||||||    
T  5065563 tgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtt 5065464  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  5065463 tatctcatatatgatga 5065447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 5253715 - 5253825
Alignment:
Q  8 gaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagttt 107  Q
    ||||||| ||| |||||  ||| || ||| ||||||||  ||||||| ||| ||||||||||||||| ||||||||  ||||||| |||||| |||||||    
T  5253715 gaggaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagttt 5253814  T
Q  108 atctcatatat 118  Q
    |||||||||||    
T  5253815 atctcatatat 5253825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 5126743 - 5126627
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| | ||||||| ||||||| ||| ||| ||||| | ||||| ||||||||||||||||||  |||| |||  ||||||| || |||| | |||    
T  5126743 tgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtt 5126644  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  5126643 tatctcatatatgatga 5126627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 5177930 - 5178036
Alignment:
Q  17 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 116  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| ||||||||||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5177930 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5178029  T
Q  117 atcatga 123  Q
    || ||||    
T  5178030 atgatga 5178036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 5279755 - 5279861
Alignment:
Q  17 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 116  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| ||||||||||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5279755 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5279854  T
Q  117 atcatga 123  Q
    || ||||    
T  5279855 atgatga 5279861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 5346210 - 5346326
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    ||||||||  |||||||| ||||||| ||| ||||||||| | ||||| ||| |||| |||||| ||| |||  |||  ||||||| || |||| || ||    
T  5346210 tgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatt 5346309  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  5346310 tatctcatatatgatga 5346326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 5689007 - 5688901
Alignment:
Q  17 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 116  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| |||||  |||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5689007 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5688908  T
Q  117 atcatga 123  Q
    || ||||    
T  5688907 atgatga 5688901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 36213035 - 36212919
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| ||||||| | ||||||| ||| ||||||||||||||| | ||| ||||||||||||||| ||||| ||  ||||||| || |||| |  ||    
T  36213035 tgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatt 36212936  T
Q  107 tatctcatatatcatga 123  Q
    |||||||| ||| ||||    
T  36212935 tatctcatttatgatga 36212919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 47985507 - 47985403
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| | ||||||| ||||||| ||| ||||| ||| | ||||| ||| | ||||||||||||| |||  |||  ||||||| ||||| | |||||    
T  47985507 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47985408  T
Q  107 tatct 111  Q
    |||||    
T  47985407 tatct 47985403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 48004081 - 48003977
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| | ||||||| ||||||| ||| ||||| ||| | ||||| ||| | ||||||||||||| |||  |||  ||||||| ||||| | |||||    
T  48004081 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48003982  T
Q  107 tatct 111  Q
    |||||    
T  48003981 tatct 48003977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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