View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10234_high_9 (Length: 252)
Name: NF10234_high_9
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 15760143 - 15760380
Alignment:
| Q |
15 |
agaagaaacggaacataaatgtacatggggcatatctccatgtacttggagactctatccagagtattggtgtaatgattgggggagcaatcatatggta |
114 |
Q |
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| T |
15760143 |
agaagaaacggaacataaatgtacatggggcatatctccatgtacttggagactctatccagagtattggtgtaatgattgggggagcaatcatatggta |
15760242 |
T |
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| Q |
115 |
taaacctgaatggaaaatagtcgatttgatttgcactctaatcttttctgtaattgtcttggccacaactatcaacatgctgagaaacattctggaagtc |
214 |
Q |
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| T |
15760243 |
taaacctgaatggaaaatagtcgatttgatttgcactctaatcttttctgtaattgtcttggccacaactatcaacatgctgagaaacatcctggaagtc |
15760342 |
T |
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| Q |
215 |
ttgatggaaagcacaccacgcgagatagatgctactca |
252 |
Q |
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| T |
15760343 |
ttgatggaaagcacaccacgcgagatagatgctactca |
15760380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 8886482 - 8886256
Alignment:
| Q |
24 |
ggaacataaatgtacatggggcatatctccatgtacttggagactctatccagagtattggtgtaatgattgggggagcaatcatatggtataaacctga |
123 |
Q |
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| T |
8886482 |
ggaacataaatgtgcaaggggcttatctccatgtactcggcgactctatccaaagtattggagtaatgatcggaggagcagttatatggtataaaccaga |
8886383 |
T |
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| Q |
124 |
atggaaaatagtcgatttgatttgcactctaatcttttctgtaattgtcttggccacaactatcaacatgctgagaaacattctggaagtcttgatggaa |
223 |
Q |
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| T |
8886382 |
atggaaaatagttgatttaatttgcactctattcttttcggcaattgttttgggaacaactatcaatatgctgcgaaacattttggaagttctgatggag |
8886283 |
T |
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| Q |
224 |
agcacaccacgcgagatagatgctact |
250 |
Q |
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| T |
8886282 |
agtacgcctcgcgagattgatgctact |
8886256 |
T |
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