View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10234_low_1 (Length: 654)

Name: NF10234_low_1
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10234_low_1
NF10234_low_1
[»] chr3 (64 HSPs)
chr3 (14-636)||(4141639-4142261)
chr3 (237-636)||(4157675-4158071)
chr3 (271-636)||(3754527-3754895)
chr3 (494-619)||(3745952-3746074)
chr3 (495-605)||(2678385-2678492)
chr3 (504-606)||(803213-803312)
chr3 (97-243)||(3754937-3755085)
chr3 (489-560)||(2456249-2456320)
chr3 (504-562)||(2696727-2696785)
chr3 (482-562)||(989394-989474)
chr3 (485-557)||(9587161-9587233)
chr3 (496-562)||(968669-968735)
chr3 (492-562)||(1931137-1931207)
chr3 (498-560)||(2644351-2644413)
chr3 (498-560)||(2659141-2659203)
chr3 (496-550)||(2686299-2686353)
chr3 (501-562)||(1007459-1007520)
chr3 (501-562)||(1022487-1022548)
chr3 (511-560)||(13498224-13498273)
chr3 (504-560)||(2442039-2442095)
chr3 (483-558)||(2459277-2459352)
chr3 (492-559)||(2631358-2631425)
chr3 (485-560)||(7334215-7334290)
chr3 (495-562)||(7432040-7432107)
chr3 (492-562)||(1940562-1940632)
chr3 (483-560)||(956381-956458)
chr3 (509-562)||(1891064-1891117)
chr3 (493-558)||(23197014-23197079)
chr3 (492-560)||(2476634-2476702)
chr3 (492-560)||(7942485-7942553)
chr3 (509-560)||(771499-771550)
chr3 (485-560)||(783775-783850)
chr3 (509-560)||(7324431-7324482)
chr3 (509-560)||(37753345-37753396)
chr3 (509-560)||(43991960-43992011)
chr3 (501-563)||(1936972-1937034)
chr3 (498-560)||(2502148-2502210)
chr3 (511-561)||(9608346-9608396)
chr3 (500-550)||(44001605-44001655)
chr3 (513-558)||(997578-997623)
chr3 (513-558)||(1013968-1014013)
chr3 (268-332)||(1889345-1889409)
chr3 (485-557)||(14888588-14888660)
chr3 (509-560)||(754609-754660)
chr3 (509-560)||(1437996-1438046)
chr3 (509-559)||(2492083-2492133)
chr3 (506-560)||(12133097-12133151)
chr3 (508-558)||(23230981-23231031)
chr3 (511-560)||(9561987-9562036)
chr3 (507-559)||(768327-768379)
chr3 (492-548)||(13479590-13479646)
chr3 (509-548)||(746383-746422)
chr3 (509-560)||(7430536-7430587)
chr3 (509-560)||(9565829-9565880)
chr3 (495-550)||(37757722-37757777)
chr3 (508-558)||(7398178-7398228)
chr3 (509-559)||(7442977-7443027)
chr3 (508-558)||(23234865-23234915)
chr3 (509-550)||(7427605-7427646)
chr3 (268-332)||(1890811-1890875)
chr3 (424-456)||(2686227-2686259)
chr3 (313-377)||(3746197-3746261)
chr3 (507-559)||(9594622-9594674)
chr3 (510-550)||(12218037-12218077)
[»] chr5 (20 HSPs)
chr5 (265-633)||(11081740-11082114)
chr5 (56-206)||(11082196-11082345)
chr5 (501-562)||(23766854-23766915)
chr5 (501-562)||(23816702-23816763)
chr5 (492-562)||(23769629-23769699)
chr5 (492-562)||(23819477-23819547)
chr5 (497-562)||(23732165-23732230)
chr5 (510-562)||(3181715-3181767)
chr5 (492-562)||(23861009-23861079)
chr5 (511-560)||(20292995-20293044)
chr5 (492-562)||(23764243-23764313)
chr5 (492-562)||(23814076-23814146)
chr5 (511-560)||(20301443-20301492)
chr5 (511-560)||(20305856-20305905)
chr5 (511-560)||(20310260-20310309)
chr5 (495-562)||(1427679-1427746)
chr5 (510-560)||(6401767-6401817)
chr5 (508-562)||(41973469-41973523)
chr5 (129-202)||(1427278-1427351)
chr5 (419-459)||(1427603-1427643)
[»] scaffold0044 (1 HSPs)
scaffold0044 (492-561)||(89142-89211)
[»] chr1 (16 HSPs)
chr1 (492-561)||(51381438-51381507)
chr1 (519-561)||(23896147-23896189)
chr1 (511-560)||(24629213-24629262)
chr1 (510-562)||(24513054-24513106)
chr1 (518-561)||(24246506-24246549)
chr1 (510-561)||(25478864-25478915)
chr1 (511-561)||(24242859-24242909)
chr1 (521-562)||(24634817-24634858)
chr1 (508-561)||(51858605-51858658)
chr1 (511-563)||(51782796-51782848)
chr1 (510-560)||(24626773-24626823)
chr1 (508-550)||(51407558-51407600)
chr1 (507-548)||(25609375-25609416)
chr1 (510-563)||(25610967-25611020)
chr1 (508-561)||(51756749-51756802)
chr1 (508-561)||(51854946-51854999)
[»] chr4 (5 HSPs)
chr4 (492-557)||(22672110-22672175)
chr4 (483-562)||(20019746-20019825)
chr4 (499-554)||(55419788-55419843)
chr4 (510-560)||(11032910-11032960)
chr4 (504-548)||(20016180-20016224)
[»] chr2 (12 HSPs)
chr2 (508-560)||(36577366-36577418)
chr2 (485-560)||(7160730-7160805)
chr2 (486-557)||(7168667-7168738)
chr2 (486-560)||(7156169-7156243)
chr2 (492-560)||(7174356-7174424)
chr2 (506-551)||(6538843-6538888)
chr2 (492-561)||(33038159-33038228)
chr2 (493-560)||(11237693-11237760)
chr2 (492-559)||(33020314-33020381)
chr2 (509-560)||(33026657-33026708)
chr2 (487-550)||(34560895-34560958)
chr2 (504-548)||(20538030-20538074)
[»] scaffold0015 (2 HSPs)
scaffold0015 (510-561)||(32330-32381)
scaffold0015 (510-561)||(40382-40433)
[»] chr7 (5 HSPs)
chr7 (510-561)||(1421170-1421221)
chr7 (483-560)||(1078134-1078211)
chr7 (492-561)||(39298976-39299045)
chr7 (507-556)||(3927063-3927112)
chr7 (509-550)||(27755733-27755774)
[»] chr8 (1 HSPs)
chr8 (493-562)||(19727879-19727948)
[»] chr6 (15 HSPs)
chr6 (500-559)||(24417477-24417536)
chr6 (492-558)||(19119065-19119131)
chr6 (492-558)||(19126359-19126425)
chr6 (499-556)||(176338-176395)
chr6 (511-556)||(9819831-9819876)
chr6 (501-557)||(370777-370833)
chr6 (499-550)||(1442098-1442149)
chr6 (511-556)||(9703888-9703933)
chr6 (511-556)||(9825517-9825562)
chr6 (508-561)||(17368365-17368418)
chr6 (506-556)||(7564748-7564798)
chr6 (508-561)||(4183000-4183053)
chr6 (508-561)||(4743844-4743897)
chr6 (508-556)||(1459540-1459588)
chr6 (508-556)||(1470922-1470970)
[»] scaffold0200 (1 HSPs)
scaffold0200 (508-562)||(777-831)
[»] scaffold1004 (1 HSPs)
scaffold1004 (512-559)||(2144-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (512-559)||(4639-4686)


Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 64)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 14 - 636
Target Start/End: Original strand, 4141639 - 4142261
Alignment:
Q  14 aaataaatattacagtgcatttgaaaaacatcaaaatcataattagaatcatagtaaaccaaacaaagaaccatataatgcaatgcataattgtgaaata 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4141639 aaataaatattacagtgcatttgaaaaacatcaaaatcataattagaatcatagaaaaccaaacaaagaaccatataatgcaatgcataattgtgaaata 4141738  T
Q  114 tatcaaatgtaatgtatgacgagagaacaaaaacctgtaacaaagaaataatataaatgaaaatgacagcaatttctgaagatgcaaaaccattcgacaa 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4141739 tatcaaatgtaacgtatgacgagagaacaaaaacctgtaacaaagaaataatataaatgaaaatgacagcaatttctgaagatgcaaaaccattcgacaa 4141838  T
Q  214 ttaattaataatccaagaagtaacatgtaacctttcatgggaaataatcctatgctcaagtgacatagcactacatctatattctagcatagagaactag 313  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4141839 ttaattaataatccaagaaataacatgtaacctttcatgggaaataatcctatgctcaagtgacatagcactacatctatattctagcatagagaactag 4141938  T
Q  314 gtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacccgtcctgggattgtaaagaatcaaattcaagtcaaa 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4141939 gtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacccctcctgggattgtaaagaatcaaattcaagtcaaa 4142038  T
Q  414 atcatacttcagcaacacttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaaggaatagtgaacaat 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142039 atcatacttcagcaacacttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaaggaatagtgaacaat 4142138  T
Q  514 ttagtccaagactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctcaaaacacccaaaaccgaca 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142139 ttagtccaagactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctcaaaacacccaaaaccgaca 4142238  T
Q  614 agtcaccaacatccacccctccc 636  Q
    |||||||||||||||||||||||    
T  4142239 agtcaccaacatccacccctccc 4142261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 237 - 636
Target Start/End: Original strand, 4157675 - 4158071
Alignment:
Q  237 catgtaacctttcatgggaaataatcctatgctcaagtgacatagcactacatctatattctagcatagagaactaggtgatattaaactttcaacacag 336  Q
    ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||| || |||   ||||||||||||||||||||||||||||| |||     
T  4157675 catgtaacctttc-tgggaaataatcctatgctcaagtgaca--gcactacatctacatccta---tagagaactaggtgatattaaactttcaatacat 4157768  T
Q  337 acttcaggaattcgtttaaaattagtagccttgaaagtacccgtcctgggattgtaaagaatcaaattcaagtcaaaatcatac---ttcagcaacactt 433  Q
    |||||||||||| ||||||||||||||||||| ||||| ||  ||||||| |||||||| | ||||||||||||| ||||||||   | |||||||||||    
T  4157769 acttcaggaattagtttaaaattagtagccttcaaagtgccgctcctggggttgtaaaggaccaaattcaagtcagaatcatacaactccagcaacactt 4157868  T
Q  434 gatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatt 533  Q
    |||||||||||||||||||||||||| |||||    |||||  ||||||||||| |||| ||||||  ||||||||||||||||||||||||||||||||    
T  4157869 gatcatcctcaaaaacatatattgccttggcaaaagccttaaatttagaaggatgtctcttgtaagagatagtgaacaatttagtccaagactctttatt 4157968  T
Q  534 tccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccct 633  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||    
T  4157969 tccatattccttcataagccaaacatcataaccagaagtggtcacgcacaagcaatccctcaaaacacccaaagccgacaagtcacacacatccacccct 4158068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 271 - 636
Target Start/End: Complemental strand, 3754895 - 3754527
Alignment:
Q  271 aagtgacatagcactacatctatattctagcatagagaactaggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttga 370  Q
    |||||||||||||| ||||||| || |||||||||||||   |||||||||||||||||| |||||||||| ||| |   |||||| ||| ||||||| |    
T  3754895 aagtgacatagcaccacatctacatcctagcatagagaagatggtgatattaaactttcaccacagacttctggagtatatttaaagttaatagccttca 3754796  T
Q  371 aagtacccgtcctgggattgtaaagaatcaaattcaagtcaaaatcat------acttcagcaacacttgatcatcctcaaaaacatatattgccctggc 464  Q
    | |||||  ||||||| |||||||||| |||||||||||||| |||||      |||||||||||||||||||||||||||||  ||| | |||| | ||    
T  3754795 aggtaccgctcctggggttgtaaagaaccaaattcaagtcaatatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgc 3754696  T
Q  465 atcgaccttaggtttagaaggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcatag 564  Q
    |  |||||  ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||       
T  3754695 aaagacctcgggtttagaaggatctctcatgcaaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaaca 3754596  T
Q  565 ccagaagtcgtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctccc 636  Q
    ||||||   |||||||||||||||||||||||||||| |||| |||||| |||||  |||||||||||||||    
T  3754595 ccagaa---gtcacgcacaagcaatccctcaaaacactcaaagccgacatgtcacacacatccacccctccc 3754527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 494 - 619
Target Start/End: Complemental strand, 3746074 - 3745952
Alignment:
Q  494 tgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccct 593  Q
    ||||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||| |||||  ||||||   ||||||||||||||||||||    
T  3746074 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa---gtcacgcacaagcaatccct 3745978  T
Q  594 caaaacacccaaaaccgacaagtcac 619  Q
     ||||||||||||  |||||||||||    
T  3745977 taaaacacccaaagacgacaagtcac 3745952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 495 - 605
Target Start/End: Original strand, 2678385 - 2678492
Alignment:
Q  495 gtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctc 594  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||  ||||||| |||||||||||  ||| ||   |||| ||||||||||||| ||    
T  2678385 gtaaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcaccacaa---gtcaagcacaagcaatccttc 2678481  T
Q  595 aaaacacccaa 605  Q
    |||||||||||    
T  2678482 aaaacacccaa 2678492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 504 - 606
Target Start/End: Original strand, 803213 - 803312
Alignment:
Q  504 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctcaaaacaccc 603  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||  ||||||    ||| |||||||||||||||||| | ||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaa---atcatgcacaagcaatccctcaacataccc 803309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 3755085 - 3754937
Alignment:
Q  97 tgcataattgtgaaatatatcaaatgtaatgtatgacgagagaacaaaaacctg-taacaaagaaataatataaatgaaaatgacagcaatttctgaaga 195  Q
    |||| ||||||||| |||||||||||||||||||||   ||||| |||||||   ||||||| |||||||||||||||||||||||| | |||||||||     
T  3755085 tgcaaaattgtgaactatatcaaatgtaatgtatga---gagaaaaaaaaccaaataacaaacaaataatataaatgaaaatgacagaagtttctgaagc 3754989  T
Q  196 tgcaa----aaccattcgacaattaattaataatccaagaagtaacatgtaa 243  Q
    |||||    |  |||||| | |||||||||||||||| ||| ||||||||||    
T  3754988 tgcaatatcattcattcgtccattaattaataatccatgaaataacatgtaa 3754937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 489 - 560
Target Start/End: Complemental strand, 2456320 - 2456249
Alignment:
Q  489 tctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  2456320 tctcatgtaaggaatatggtacaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 504 - 562
Target Start/End: Original strand, 2696727 - 2696785
Alignment:
Q  504 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcat 2696785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 482 - 562
Target Start/End: Complemental strand, 989474 - 989394
Alignment:
Q  482 aaggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||||| || || ||||| | |||||||||||    
T  989474 aaggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcat 989394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 485 - 557
Target Start/End: Original strand, 9587161 - 9587233
Alignment:
Q  485 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 557  Q
    |||||| ||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  9587161 gatctcccatgtaaggaatattgtacaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 968735 - 968669
Alignment:
Q  496 taaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||    
T  968735 taagaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatcat 968669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 492 - 562
Target Start/End: Original strand, 1931137 - 1931207
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||||||| ||||||||||||||||||||| || ||||||||||||| |||| |||||| |||||||||||    
T  1931137 catgtaagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatcat 1931207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 560
Target Start/End: Original strand, 2644351 - 2644413
Alignment:
Q  498 aggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  2644351 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 560
Target Start/End: Original strand, 2659141 - 2659203
Alignment:
Q  498 aggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  2659141 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 2686299 - 2686353
Alignment:
Q  496 taaggaatagtgaacaatttagtccaagactctttatttccatattccttcataa 550  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  2686299 taaggaatagtgaacaatttattccaagactctttttttccatattccttcataa 2686353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 501 - 562
Target Start/End: Complemental strand, 1007520 - 1007459
Alignment:
Q  501 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||    
T  1007520 aatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcat 1007459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 501 - 562
Target Start/End: Complemental strand, 1022548 - 1022487
Alignment:
Q  501 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||    
T  1022548 aatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcat 1022487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 560
Target Start/End: Complemental strand, 2442095 - 2442039
Alignment:
Q  504 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  2442095 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 2459352 - 2459277
Alignment:
Q  483 aggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaaca 558  Q
    |||||||  |||||||| ||  || |||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  2459352 aggatctggcatgtaagaaacggtaaacaattttgtccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 492 - 559
Target Start/End: Complemental strand, 2631425 - 2631358
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacat 559  Q
    ||||| ||||| | || ||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  2631425 catgtcaggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 560
Target Start/End: Original strand, 7334215 - 7334290
Alignment:
Q  485 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||| ||| || |||||||||| |||||||||||||||||||||||||||| || |||||||| | |||||||||    
T  7334215 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 7432040 - 7432107
Alignment:
Q  495 gtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    ||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||  |||||||||||    
T  7432040 gtaagaaatggtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatcat 7432107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 562
Target Start/End: Original strand, 1940562 - 1940632
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||| ||| ||||||||||||||||||||| || |||| |||||||| ||||||||||| |||||||||||    
T  1940562 catgcaagaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcat 1940632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 483 - 560
Target Start/End: Complemental strand, 956458 - 956381
Alignment:
Q  483 aggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||  ||||| || |||| |||||||||||  |||||||||||| ||||||||||||||||||| |||||||||    
T  956458 aggatcttgcatgtgagaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 1891064 - 1891117
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatcat 1891117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 493 - 558
Target Start/End: Complemental strand, 23197079 - 23197014
Alignment:
Q  493 atgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaaca 558  Q
    ||||||||||||   ||||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  23197079 atgtaaggaatacgaaacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 492 - 560
Target Start/End: Complemental strand, 2476702 - 2476634
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  2476702 catgttaggaacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 2476634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 492 - 560
Target Start/End: Complemental strand, 7942553 - 7942485
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||| | || |||||||| |||||||||||||||| ||||| |||||||||| |||||||||    
T  7942553 catgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 771499 - 771550
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 560
Target Start/End: Original strand, 783775 - 783850
Alignment:
Q  485 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||| ||||||||||| |||  ||||||||||||| | || | ||||||||||||||||||||| |||||||||    
T  783775 gatctcccatgtaaggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatc 783850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 7324431 - 7324482
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||||||||||||||||||||||| || |||||||||| |||||||||    
T  7324431 acaatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 37753345 - 37753396
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacatc 37753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 509 - 560
Target Start/End: Complemental strand, 43992011 - 43991960
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  43992011 acaatttggtccaagactctatatttccatattccttcataatccaaacatc 43991960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 563
Target Start/End: Original strand, 1936972 - 1937034
Alignment:
Q  501 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcata 563  Q
    ||||||||||||||||| ||| || |||||||||  |||||||||||||| ||||||||||||    
T  1936972 aatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatcata 1937034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 498 - 560
Target Start/End: Complemental strand, 2502210 - 2502148
Alignment:
Q  498 aggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||||| ||| |||||||||| |||| ||||||||||| |||||||||| |||||||||    
T  2502210 aggaatagtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatc 2502148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 511 - 561
Target Start/End: Original strand, 9608346 - 9608396
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatca 9608396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 550
Target Start/End: Complemental strand, 44001655 - 44001605
Alignment:
Q  500 gaatagtgaacaatttagtccaagactctttatttccatattccttcataa 550  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  44001655 gaatagtgtacagtttagtccaagactctttaattccatattccttcataa 44001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 513 - 558
Target Start/End: Complemental strand, 997623 - 997578
Alignment:
Q  513 tttagtccaagactctttatttccatattccttcataagccaaaca 558  Q
    |||||||||||||||||||||||||||||||||||| | |||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaaca 997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 513 - 558
Target Start/End: Complemental strand, 1014013 - 1013968
Alignment:
Q  513 tttagtccaagactctttatttccatattccttcataagccaaaca 558  Q
    |||||||||||||||||||||||||||||||||||| | |||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 1889345 - 1889409
Alignment:
Q  268 ctcaagtgacatagcactacatctatattctagcatagagaactaggtgatattaaactttcaac 332  Q
    ||||||||||||||||| ||||||| ||||||||||  ||||| ||||||||| ||||| |||||    
T  1889345 ctcaagtgacatagcaccacatctacattctagcattaagaacaaggtgatatcaaactctcaac 1889409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 557
Target Start/End: Original strand, 14888588 - 14888660
Alignment:
Q  485 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 557  Q
    |||||| |||||||| |||| || ||||||||||| ||| |||||||||| ||||||| ||||||| ||||||    
T  14888588 gatctcccatgtaagtaatattgtacaatttagtctaaggctctttattttcatattcattcataatccaaac 14888660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 754609 - 754660
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||||||||||||| || |||||| |||||||||| |||||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaacatc 754660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 560
Target Start/End: Complemental strand, 1438046 - 1437996
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  1438046 acaatttaatccaagagtctttatttccatattccttcataa-ccaaacatc 1437996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 2492133 - 2492083
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacat 559  Q
    ||||||||||||||||||||  ||||||||| |||||||||| ||||||||    
T  2492133 acaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 560
Target Start/End: Complemental strand, 12133151 - 12133097
Alignment:
Q  506 tgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||||||||||| |||||| |||||||||| ||| |||||| |||||||||    
T  12133151 tgaacaatttagtccacgactctctatttccatactccctcataacccaaacatc 12133097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 23230981 - 23231031
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaaca 558  Q
    ||||||||| |||||||||||| |||||||||||| ||||| |||||||||    
T  23230981 aacaatttaatccaagactcttcatttccatattctttcattagccaaaca 23231031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 9561987 - 9562036
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||||||||||| ||||||||| || ||||||| |||||||||    
T  9561987 aatttagtccaagactcttgatttccatactcattcataatccaaacatc 9562036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 768327 - 768379
Alignment:
Q  507 gaacaatttagtccaagactctttatttccatattccttcataagccaaacat 559  Q
    ||||||||||||||||||||||| |||||| || || ||||||| ||||||||    
T  768327 gaacaatttagtccaagactcttcatttccgtactcattcataatccaaacat 768379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 548
Target Start/End: Complemental strand, 13479646 - 13479590
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcat 548  Q
    ||||| || ||||||||||||||| ||||||||||||| | |||||||||| |||||    
T  13479646 catgttagaaatagtgaacaattttgtccaagactcttgaattccatattctttcat 13479590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 548
Target Start/End: Original strand, 746383 - 746422
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcat 548  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  746383 acaatttagtccaagactcttgatttccatactccttcat 746422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 7430536 - 7430587
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||| |||||| |||||||||||| | |||||||| |||||||||    
T  7430536 acaatttagtctaagactttttatttccatacttcttcataatccaaacatc 7430587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 9565829 - 9565880
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||||||||||||| || ||| || |||||||||| |||||||||    
T  9565829 acaatttagtccaagactcttgatctccgtactccttcataatccaaacatc 9565880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 550
Target Start/End: Original strand, 37757722 - 37757777
Alignment:
Q  495 gtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataa 550  Q
    |||||||| | || |||| || |||||||||||||| |||||||||||||||||||    
T  37757722 gtaaggaacactgtacaacttcgtccaagactctttgtttccatattccttcataa 37757777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 7398178 - 7398228
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaaca 558  Q
    ||||||||| |||||||||||| ||||||||| |||||||| | |||||||    
T  7398178 aacaatttaatccaagactcttcatttccatactccttcatcaaccaaaca 7398228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 7442977 - 7443027
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacat 559  Q
    |||| |||||||||||||||| ||||||||| |||||||| | ||||||||    
T  7442977 acaacttagtccaagactcttgatttccatactccttcatgatccaaacat 7443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 23234865 - 23234915
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaaca 558  Q
    |||||||||||||||||||||   ||||||||||| ||||| |||||||||    
T  23234865 aacaatttagtccaagactctacgtttccatattctttcatcagccaaaca 23234915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 550
Target Start/End: Original strand, 7427605 - 7427646
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataa 550  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||    
T  7427605 acaatttagcccacgactctttatttccatattccatcataa 7427646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 1890811 - 1890875
Alignment:
Q  268 ctcaagtgacatagcactacatctatattctagcatagagaactaggtgatattaaactttcaac 332  Q
    |||||||||||||| || ||||||| ||||||||||  ||||| ||| ||||| ||||| |||||    
T  1890811 ctcaagtgacatagtaccacatctacattctagcattaagaacaaggcgatatcaaactctcaac 1890875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 456
Target Start/End: Original strand, 2686227 - 2686259
Alignment:
Q  424 agcaacacttgatcatcctcaaaaacatatatt 456  Q
    |||| ||||||||||||||||||||||||||||    
T  2686227 agcagcacttgatcatcctcaaaaacatatatt 2686259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 3746261 - 3746197
Alignment:
Q  313 ggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacc 377  Q
    |||||||||||||| |||||||||||||| |||| |  | |||||| ||||| ||| ||||||||    
T  3746261 ggtgatattaaactctcaacacagacttctggaacttttctaaaatcagtagacttcaaagtacc 3746197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 9594622 - 9594674
Alignment:
Q  507 gaacaatttagtccaagactctttatttccatattccttcataagccaaacat 559  Q
    ||||||||||||||||||||||| |||||| || |  ||||||| ||||||||    
T  9594622 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 9594674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 12218077 - 12218037
Alignment:
Q  510 caatttagtccaagactctttatttccatattccttcataa 550  Q
    |||||||| ||| ||||||||||||||||||||| ||||||    
T  12218077 caatttagcccacgactctttatttccatattccatcataa 12218037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 3e-99; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 265 - 633
Target Start/End: Complemental strand, 11082114 - 11081740
Alignment:
Q  265 atgctcaagtgacatagcactacatctatattctagcatagagaactaggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtag 364  Q
    |||||||||||||| ||||| ||||||| ||  ||  ||||||||| |||||||| ||||||||||||||||||||| |||||   |||||||||| |||    
T  11082114 atgctcaagtgacaaagcaccacatctacatcttaatatagagaacaaggtgatactaaactttcaacacagacttctggaatatctttaaaattattag 11082015  T
Q  365 ccttgaaagtacccgtcctgggattgtaaagaatcaaattcaagtcaaaatcat------acttcagcaacacttgatcatcctcaaaaacatatattgc 458  Q
    |||| |||||||   |||| ||||||||||||||||||||||||||||||||||      |||||| ||||||||||||||||||||| | ||||| |||    
T  11082014 ccttcaaagtacggctcctaggattgtaaagaatcaaattcaagtcaaaatcattcataaacttcaacaacacttgatcatcctcaaatatatatactgc 11081915  T
Q  459 cctggcatcgaccttaggtttagaaggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaaca 558  Q
    | ||| |  ||| | | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  11081914 cttgggaaagacatcacgtttagaaggatctctcatgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaaca 11081815  T
Q  559 tcatagccagaagtcgtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccct 633  Q
    ||||  | || ||||||||| ||||||||||||||||||||||||||| ||||||||| ||  ||||||||||||    
T  11081814 tcatcactagtagtcgtcacacacaagcaatccctcaaaacacccaaagccgacaagttacgcacatccacccct 11081740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 56 - 206
Target Start/End: Complemental strand, 11082345 - 11082196
Alignment:
Q  56 ttagaatcatagtaaaccaaacaaagaaccatataatgcaatgcataattgtgaaatatatcaaatgtaatgtatgacgagagaacaaaaacctgtaaca 155  Q
    |||||||||||| |||  |||| ||| | ||||||| | |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | |||    
T  11082345 ttagaatcatag-aaattaaacgaagtatcatataacgtaatgcataattgtgaactatatcaaatgtaatgtatgatgagagaacaaaaacctctgaca 11082247  T
Q  156 aagaaataatataaatgaaaatgacagcaatttctgaagatgcaaaaccat 206  Q
    || |||||||||||||||||||||||| ||||||||||| | |||||||||    
T  11082246 aacaaataatataaatgaaaatgacagaaatttctgaagctacaaaaccat 11082196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 501 - 562
Target Start/End: Original strand, 23766854 - 23766915
Alignment:
Q  501 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcat 23766915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 501 - 562
Target Start/End: Original strand, 23816702 - 23816763
Alignment:
Q  501 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcat 23816763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 492 - 562
Target Start/End: Original strand, 23769629 - 23769699
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||    
T  23769629 catgaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23769699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 492 - 562
Target Start/End: Original strand, 23819477 - 23819547
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||    
T  23819477 catgaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23819547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 497 - 562
Target Start/End: Complemental strand, 23732230 - 23732165
Alignment:
Q  497 aaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    ||||||||||||||| |||| |||||||| ||||||| |||||||||||||||| |||||||||||    
T  23732230 aaggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatcat 23732165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 562
Target Start/End: Complemental strand, 3181767 - 3181715
Alignment:
Q  510 caatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacatcat 3181715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 562
Target Start/End: Original strand, 23861009 - 23861079
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||| ||||||||||||||||||||||||||||| ||||  | |||||||||||||| | |||||||||||    
T  23861009 catgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcat 23861079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 562
Target Start/End: Original strand, 23764243 - 23764313
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||| ||||||||||||||||| ||||||||||| ||||  | |||||||||||||| | |||||||||||    
T  23764243 catgaaaggaatagtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatcat 23764313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 562
Target Start/End: Original strand, 23814076 - 23814146
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||| ||||||||||||||||||||||||||||| || |  | |||||||||||||| | |||||||||||    
T  23814076 catgaaaggaatagtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatcat 23814146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||||||||||||| || ||||||||||||||| |||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 20305905 - 20305856
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatc 20305856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 20310309 - 20310260
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatc 20310260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 1427679 - 1427746
Alignment:
Q  495 gtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    ||||| ||| ||||||| |||| ||||||||||| |||||||||| || ||||||| |||||||||||    
T  1427679 gtaagaaattgtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatcat 1427746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 560
Target Start/End: Original strand, 6401767 - 6401817
Alignment:
Q  510 caatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||||||| |||||| ||||| || ||||||||||||||||||||||    
T  6401767 caatttagtccatgactctctattttcaaattccttcataagccaaacatc 6401817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 41973469 - 41973523
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||| ||||||||| ||| |||||||| ||||||||||||||| |||||||||||    
T  41973469 aacagtttagtccatgacactttattttcatattccttcataacccaaacatcat 41973523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 1427278 - 1427351
Alignment:
Q  129 atgacgagagaacaaaaacctgtaacaaagaaataatataaatgaaaatgacagcaatttctgaagatgcaaaa 202  Q
    |||| |||||||||||||| | ||||||| | ||||||||||||||||| |  ||||||||| ||| |||||||    
T  1427278 atgaggagagaacaaaaacttctaacaaacatataatataaatgaaaataatggcaatttctcaagttgcaaaa 1427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 1427603 - 1427643
Alignment:
Q  419 acttcagcaacacttgatcatcctcaaaaacatatattgcc 459  Q
    ||||||||| |||||||||||||||||| | ||||||||||    
T  1427603 acttcagcagcacttgatcatcctcaaagatatatattgcc 1427643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 492 - 561
Target Start/End: Complemental strand, 89211 - 89142
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  89211 catgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 492 - 561
Target Start/End: Original strand, 51381438 - 51381507
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||    
T  51381438 catgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 519 - 561
Target Start/End: Original strand, 23896147 - 23896189
Alignment:
Q  519 ccaagactctttatttccatattccttcataagccaaacatca 561  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23896147 ccaagactctttatttccatattccttcataagccaaacatca 23896189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 24629213 - 24629262
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatc 24629262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 562
Target Start/End: Complemental strand, 24513106 - 24513054
Alignment:
Q  510 caatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    ||||||| |||| ||||||||| |||||||||| |||||||||||||||||||    
T  24513106 caatttaatccatgactctttacttccatattctttcataagccaaacatcat 24513054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 518 - 561
Target Start/End: Original strand, 24246506 - 24246549
Alignment:
Q  518 tccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  24246506 tccaagactctttatttccgtattctttcataagccaaacatca 24246549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 25478915 - 25478864
Alignment:
Q  510 caatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||| ||||||| |||||||| || ||||||||||||||||||||||||    
T  25478915 caatttaatccaagattctttattaccgtattccttcataagccaaacatca 25478864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 561
Target Start/End: Original strand, 24242859 - 24242909
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    |||||| ||||||||||||||||||| |||  |||||||||||||||||||    
T  24242859 aatttaatccaagactctttatttccgtatatcttcataagccaaacatca 24242909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 562
Target Start/End: Original strand, 24634817 - 24634858
Alignment:
Q  521 aagactctttatttccatattccttcataagccaaacatcat 562  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  24634817 aagactctttaattccgtattccttcataagccaaacatcat 24634858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 561
Target Start/End: Complemental strand, 51858658 - 51858605
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||||||||||||| |||  |||||||||||||||||| | ||||||||||    
T  51858658 aacaatttagtccaagattctacatttccatattccttcatgatccaaacatca 51858605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 563
Target Start/End: Complemental strand, 51782848 - 51782796
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaacatcata 563  Q
    |||||| ||||||| | || |||||||||||||||||||| ||||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacatcata 51782796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 560
Target Start/End: Original strand, 24626773 - 24626823
Alignment:
Q  510 caatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||  ||||||||||||| |||  |||||||||||||||||||||||    
T  24626773 caatttaacccaagactctttaattctgtattccttcataagccaaacatc 24626823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 550
Target Start/End: Original strand, 51407558 - 51407600
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataa 550  Q
    ||||||||||||||||||| || ||| ||||||||||||||||    
T  51407558 aacaatttagtccaagactgttcattcccatattccttcataa 51407600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Original strand, 25609375 - 25609416
Alignment:
Q  507 gaacaatttagtccaagactctttatttccatattccttcat 548  Q
    ||||||||||||||||||||||| | || |||||||||||||    
T  25609375 gaacaatttagtccaagactcttgaatttcatattccttcat 25609416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 563
Target Start/End: Original strand, 25610967 - 25611020
Alignment:
Q  510 caatttagtccaagactctttatttccatattccttcataagccaaacatcata 563  Q
    |||||||  |||||| ||||||||||| |||||| |||| ||||||||||||||    
T  25610967 caatttaacccaagattctttatttccgtattccgtcattagccaaacatcata 25611020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 561
Target Start/End: Original strand, 51756749 - 51756802
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||||||||||||| | |  |||||||||||||||||| | ||||||||||    
T  51756749 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 51756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 561
Target Start/End: Complemental strand, 51854999 - 51854946
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||||||||||||| |||  |||||||||||| ||||| | ||||||||||    
T  51854999 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 51854946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 492 - 557
Target Start/End: Original strand, 22672110 - 22672175
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 557  Q
    |||||||| |||||||||||||||||||||||| || |||||||||||||||||||| | ||||||    
T  22672110 catgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaac 22672175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 483 - 562
Target Start/End: Original strand, 20019746 - 20019825
Alignment:
Q  483 aggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||||||  ||||| || || |||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||    
T  20019746 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 20019825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 499 - 554
Target Start/End: Complemental strand, 55419843 - 55419788
Alignment:
Q  499 ggaatagtgaacaatttagtccaagactctttatttccatattccttcataagcca 554  Q
    |||||||| ||||||||||||||||| ||||||||||||||  |||||||||||||    
T  55419843 ggaatagtaaacaatttagtccaagaatctttatttccataaaccttcataagcca 55419788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 560
Target Start/End: Complemental strand, 11032960 - 11032910
Alignment:
Q  510 caatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  11032960 caatttaatccaagactctttatttccgtattccttcatgagccaaacatc 11032910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 504 - 548
Target Start/End: Original strand, 20016180 - 20016224
Alignment:
Q  504 agtgaacaatttagtccaagactctttatttccatattccttcat 548  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  20016180 agtgaacaatttagtccaagactcttgaattccatattccttcat 20016224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 508 - 560
Target Start/End: Complemental strand, 36577418 - 36577366
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 560
Target Start/End: Original strand, 7160730 - 7160805
Alignment:
Q  485 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||| |||||| ||||| |  |||||||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  7160730 gatctttcatgtgaggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 486 - 557
Target Start/End: Original strand, 7168667 - 7168738
Alignment:
Q  486 atctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 557  Q
    ||||| |||||||||||    |||||||||||||||||| || |||||||||||||||||||||||||||||    
T  7168667 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 486 - 560
Target Start/End: Original strand, 7156169 - 7156243
Alignment:
Q  486 atctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||| ||||||||||| |  ||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  7156169 atctcccatgtaaggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 492 - 560
Target Start/End: Original strand, 7174356 - 7174424
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||||||||| |  ||||||| |||||||||| |||| |||||||||||||||||||||||| |||||    
T  7174356 catgtaaggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 6538888 - 6538843
Alignment:
Q  506 tgaacaatttagtccaagactctttatttccatattccttcataag 551  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccatactccttcataag 6538843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 492 - 561
Target Start/End: Complemental strand, 33038228 - 33038159
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||||||| |  | ||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  33038228 catgtaaggaacacggtacaatctagtccaagactttttgtttccatattccttcataatccaaacatca 33038159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 560
Target Start/End: Complemental strand, 11237760 - 11237693
Alignment:
Q  493 atgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||||| |  |||||||||||||||||  ||| |||||||||| |||| |||||||||||||||    
T  11237760 atgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 11237693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 559
Target Start/End: Complemental strand, 33020381 - 33020314
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacat 559  Q
    ||||||||||| |  | ||||| |||||||||||| ||||||||||||||||||||||| ||| ||||    
T  33020381 catgtaaggaacacggtacaatctagtccaagactttttatttccatattccttcataatccacacat 33020314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 560
Target Start/End: Complemental strand, 33026708 - 33026657
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    ||||| |||||||||||| |||||||||||||| |||||||| |||||||||    
T  33026708 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 33026657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 550
Target Start/End: Original strand, 34560895 - 34560958
Alignment:
Q  487 tctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataa 550  Q
    |||||||||| ||||| | |  |||||||||||||||| | ||||||||||||||| |||||||    
T  34560895 tctctcatgttaggaacactatacaatttagtccaagattttttatttccatattctttcataa 34560958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 548
Target Start/End: Complemental strand, 20538074 - 20538030
Alignment:
Q  504 agtgaacaatttagtccaagactctttatttccatattccttcat 548  Q
    ||||||||||||||||||||| |||| | |||||||||| |||||    
T  20538074 agtgaacaatttagtccaagattcttaaattccatattcattcat 20538030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Original strand, 32330 - 32381
Alignment:
Q  510 caatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 32381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 561
Target Start/End: Original strand, 40382 - 40433
Alignment:
Q  510 caatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  40382 caatttaatccaagagtctttattttcatattccttcataagccaaacatca 40433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Original strand, 1421170 - 1421221
Alignment:
Q  510 caatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcataagccaaacatca 1421221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 1078134 - 1078211
Alignment:
Q  483 aggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 560  Q
    |||||||| | |||||| || | |||||||||||||||| |||||| |||||||||| |||||||||| |||||||||    
T  1078134 aggatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc 1078211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 492 - 561
Target Start/End: Complemental strand, 39299045 - 39298976
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||||||| | || | ||||||||||| ||||||||||||||| ||||||||| || ||||||||||    
T  39299045 catgtaaggaacactgtaaaatttagtccaggactctttatttccacattccttcaaaacccaaacatca 39298976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 556
Target Start/End: Complemental strand, 3927112 - 3927063
Alignment:
Q  507 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 556  Q
    |||||||||||||||||| | |||||||||||| |||||||||| |||||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaa 3927063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 550
Target Start/End: Complemental strand, 27755774 - 27755733
Alignment:
Q  509 acaatttagtccaagactctttatttccatattccttcataa 550  Q
    ||||||||||| | ||||||||||||| ||||||||||||||    
T  27755774 acaatttagtctatgactctttatttctatattccttcataa 27755733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 493 - 562
Target Start/End: Complemental strand, 19727948 - 19727879
Alignment:
Q  493 atgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    ||||||| ||||||||||| ||||||||| |||||||||||| |||||||  |||||| |||||||||||    
T  19727948 atgtaagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcat 19727879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 500 - 559
Target Start/End: Original strand, 24417477 - 24417536
Alignment:
Q  500 gaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacat 559  Q
    ||||| || |||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  24417477 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 558
Target Start/End: Complemental strand, 19119131 - 19119065
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaaca 558  Q
    ||||||||||| |   |||||||||||||||||||||| |||||||||||||||||| | |||||||    
T  19119131 catgtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 558
Target Start/End: Complemental strand, 19126425 - 19126359
Alignment:
Q  492 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaaca 558  Q
    ||||||||||| |   |||||||||||||||||||||| |||||||||||||||||| | |||||||    
T  19126425 catgtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 556
Target Start/End: Complemental strand, 176395 - 176338
Alignment:
Q  499 ggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaa 556  Q
    |||| ||||||||||||||||||||| |||||||||||||| || |||||| ||||||    
T  176395 ggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaa 176338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 556
Target Start/End: Original strand, 9819831 - 9819876
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaa 556  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 557
Target Start/End: Original strand, 370777 - 370833
Alignment:
Q  501 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 557  Q
    |||| ||||||||||||||||||| |||||||||||||| | |||||||| ||||||    
T  370777 aatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 550
Target Start/End: Original strand, 1442098 - 1442149
Alignment:
Q  499 ggaatagtgaacaatttagtccaagactctttatttccatattccttcataa 550  Q
    |||| ||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  1442098 ggaacagtgaacaatttagtccaagaatctttaattccataatccttcataa 1442149  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 511 - 556
Target Start/End: Original strand, 9703888 - 9703933
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaa 556  Q
    |||||||||||| | ||| |||||||||||||||||||||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaa 9703933  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 511 - 556
Target Start/End: Original strand, 9825517 - 9825562
Alignment:
Q  511 aatttagtccaagactctttatttccatattccttcataagccaaa 556  Q
    |||||||||||||| | | |||||||||||||||||||||||||||    
T  9825517 aatttagtccaagagtttctatttccatattccttcataagccaaa 9825562  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 561
Target Start/End: Complemental strand, 17368418 - 17368365
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    |||||||||||||||||| ||| ||||||||| || ||||| ||||||||||||    
T  17368418 aacaatttagtccaagacccttcatttccatactctttcatcagccaaacatca 17368365  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 556
Target Start/End: Original strand, 7564748 - 7564798
Alignment:
Q  506 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 556  Q
    ||||||||||||||||||| || || |||||||| |||||||||| |||||    
T  7564748 tgaacaatttagtccaagaatccttgtttccataatccttcataacccaaa 7564798  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 561
Target Start/End: Original strand, 4183000 - 4183053
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||||||||||||| | |  |||||||||||||||||| | ||||||||||    
T  4183000 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 4183053  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 561
Target Start/End: Original strand, 4743844 - 4743897
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 561  Q
    ||||||||||||||||| | |  |||||||||||||||||| | ||||||||||    
T  4743844 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 4743897  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 556
Target Start/End: Original strand, 1459540 - 1459588
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaa 556  Q
    ||||||||||||||||| |||||||||||| | || ||||||| |||||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaa 1459588  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 556
Target Start/End: Original strand, 1470922 - 1470970
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaa 556  Q
    |||||||||| |||||| |||||||||||||| || ||||||| |||||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaa 1470970  T

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Target: scaffold0200 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 777 - 831
Alignment:
Q  508 aacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 562  Q
    |||| ||||||||| ||| |||||||| ||||||||||||||| |||||||||||    
T  777 aacagtttagtccatgacactttattttcatattccttcataacccaaacatcat 831  T

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Target: scaffold1004 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 559
Target Start/End: Complemental strand, 2191 - 2144
Alignment:
Q  512 atttagtccaagactctttatttccatattccttcataagccaaacat 559  Q
    |||||||||||||||||  |||||||||||||||||||  ||||||||    
T  2191 atttagtccaagactctacatttccatattccttcatagcccaaacat 2144  T

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Target: scaffold0760 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 559
Target Start/End: Complemental strand, 4686 - 4639
Alignment:
Q  512 atttagtccaagactctttatttccatattccttcataagccaaacat 559  Q
    |||||||||||||||||  |||||||||||||||||||  ||||||||    
T  4686 atttagtccaagactctacatttccatattccttcatagcccaaacat 4639  T

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