View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10234_low_10 (Length: 299)
Name: NF10234_low_10
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 16270580 - 16270847
Alignment:
| Q |
14 |
agaagttggtgtgttcttttacatgagaaataacatagaaatcgttacaatgcattcagataataatatacatcaaacaaaaatattgtaaagaaaagta |
113 |
Q |
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| T |
16270580 |
agaagctggtgtgttcttt-acatgagaaataacatagaaatcgttaaaatgcattcagataataatatacatcaaacaaaaatattgttaaaaaaagta |
16270678 |
T |
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| Q |
114 |
tatcaaac-aacattacatatataatattgaggataatcaatacac--aggttttggcacaagagtgaatccttactatttggac----nnnnnnngggt |
206 |
Q |
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| T |
16270679 |
tatcaaacaaaaaatacatatataatattgagcataatcagtacacataggttttg--------ttgaagccttactatttggactttttcgttttgggt |
16270770 |
T |
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| Q |
207 |
ctatatttaaatgcccctaaacataatacatagattactaaacttgcaaagaatttgtgtttaatggcgtaccaaat |
283 |
Q |
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| T |
16270771 |
ccatagttaaatgcccctaaacgtaatgcatagattaccaaacttgcaaagaatttgtgtttaatggcgtcccaaat |
16270847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 86 - 283
Target Start/End: Original strand, 16288222 - 16288413
Alignment:
| Q |
86 |
tcaaacaaaaatattgtaaagaaaagtatatcaaacaacattacatatataatattgaggataatcaatacaca--ggttttggcacaagagtgaatcct |
183 |
Q |
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| T |
16288222 |
tcaaacaaaaatattgtcaa-aaaagtatatcaa----cattacatatataatattgaggagaatcaatacacataggttttggcacaagagtgaatcct |
16288316 |
T |
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| Q |
184 |
tactatttggacnnnnnnngggtctatatttaaatgcccctaaacataatacatagattactaaacttgcaaagaatttgtgtttaatggcgtaccaaat |
283 |
Q |
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| T |
16288317 |
tactatttggactttttttgggtctatatttaaatgcacctaaacatattac--agaatattaaactttcaaagaattt-tgtttaatggggtaccaaat |
16288413 |
T |
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