View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10234_low_11 (Length: 295)

Name: NF10234_low_11
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10234_low_11
NF10234_low_11
[»] chr4 (7 HSPs)
chr4 (7-237)||(4337083-4337313)
chr4 (7-237)||(4319177-4319416)
chr4 (18-224)||(4122538-4122747)
chr4 (7-123)||(4132616-4132729)
chr4 (16-236)||(4346553-4346779)
chr4 (173-230)||(4132515-4132572)
chr4 (16-123)||(4362742-4362849)
[»] chr6 (7 HSPs)
chr6 (7-123)||(5065447-5065563)
chr6 (8-118)||(5253715-5253825)
chr6 (7-123)||(5126627-5126743)
chr6 (17-123)||(5177930-5178036)
chr6 (17-123)||(5279755-5279861)
chr6 (7-123)||(5346210-5346326)
chr6 (17-123)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (7-123)||(36212919-36213035)
[»] chr3 (2 HSPs)
chr3 (7-111)||(47985403-47985507)
chr3 (7-111)||(48003977-48004081)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 4337083 - 4337313
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337083 tgaggagtggcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 4337182  T
Q  107 tatctcatatatcatgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337183 tatctcatatatcatgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 4337282  T
Q  207 tctctcttcaagtagagcctgcagatgattt 237  Q
    |||||||||||||||||||||||||||||||    
T  4337283 tctctcttcaagtagagcctgcagatgattt 4337313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 4319416 - 4319177
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||  ||||||||| ||| ||||||||||||||||||| || || ||||||||||| ||||||||||||||||  |||||||||| |||| |||||    
T  4319416 tgaggagtggcagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtt 4319317  T
Q  107 tatctcatatatcatga---------cgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctg 197  Q
    |||||||||||| ||||         ||||| ||| |||||||||||| |||||||| |||||||||| ||||| |  |||||| |||||||||||||||    
T  4319316 tatctcatatatgatgaaccagtcgtcgaaatattggagcaatgtcatacaccagataagaatgttcttgttgatatcggtgatgaaaatgaatgtgctg 4319217  T
Q  198 ccaagaggatctctcttcaagtagagcctgcagatgattt 237  Q
    ||| |||||||||||  |||||||||||| ||||||||||    
T  4319216 ccatgaggatctctcgccaagtagagcctacagatgattt 4319177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 4122747 - 4122538
Alignment:
Q  18 agagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatata 117  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||  |||||||||| |||| ||||||||||||||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  118 tcatga---------cgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagaggatc 208  Q
    | ||||          |||||| | |||||||| ||||||||| || ||||||||   ||||   |||||| | |||||||||| |||||||||||| ||    
T  4122647 tgatgaaccaatcggtgaaaaaatagagcaatgccatgcaccaaataagaatgtt---gttg---gtggtgctgaaaatgaatgcgctgccaagagggtc 4122554  T
Q  209 tctcttcaagtagagc 224  Q
    ||||| ||||||||||    
T  4122553 tctctgcaagtagagc 4122538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 4132729 - 4132616
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||  ||||||||| ||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||  |||||||||| |||| |||||    
T  4132729 tgaggagtggcagagagtagtatcaaatatggaacctggtgacaaagtcgagattgt---tgtttttgggaacagtttcattgtgatgaagacagcagtt 4132633  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  4132632 tatctcatatatgatga 4132616  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 4346553 - 4346779
Alignment:
Q  16 gcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcata 115  Q
    ||||||| || |||| ||||||||||||||||| ||||| ||||| ||||||||| | | ||||| |   ||||||| || |||| ||||||||||||||    
T  4346553 gcagagaatgatatcgaatatggaacctggtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagacagcagtttatctcata 4346652  T
Q  116 tatca---------tgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 206  Q
    ||| |         |||||||||| | || || ||| |||||||||||  ||||||| | ||||   |||||||| ||||||||||  || |||||||||    
T  4346653 tatgatgaaccaattgacgaaaaaatagaccattgtgatgcaccagatatgaatgttattgttg---gtggtgatgaaaatgaatgctcttccaagagga 4346749  T
Q  207 tctctcttcaagtagagcctgcagatgatt 236  Q
    | |||| |||||||||| |  |||||||||    
T  4346750 tttctcctcaagtagagtccacagatgatt 4346779  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 4132572 - 4132515
Alignment:
Q  173 agtggtgataaaaatgaatgtgctgccaagaggatctctcttcaagtagagcctgcag 230  Q
    ||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  4132572 agtggtgatgaaaatgaatgtgctgccaagaggttcactcttcaagtagagcccgcag 4132515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 4362742 - 4362849
Alignment:
Q  16 gcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcata 115  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||| ||||  | | ||||| |   ||||||| || |||| ||||||||||||||    
T  4362742 gcagagagtgatatcaaatatggaacctggtgacaaagtggagatagttattgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcata 4362841  T
Q  116 tatcatga 123  Q
    ||| ||||    
T  4362842 tatgatga 4362849  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 5065563 - 5065447
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| ||||||||| ||||||| ||| ||||||||  ||||||| ||  ||||||||||||||| |||| |||   |||||| |||||||||||||    
T  5065563 tgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtt 5065464  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  5065463 tatctcatatatgatga 5065447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 5253715 - 5253825
Alignment:
Q  8 gaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagttt 107  Q
    ||||||| ||| |||||  ||| || ||| ||||||||  ||||||| ||| ||||||||||||||| ||||||||  ||||||| |||||| |||||||    
T  5253715 gaggaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagttt 5253814  T
Q  108 atctcatatat 118  Q
    |||||||||||    
T  5253815 atctcatatat 5253825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 5126743 - 5126627
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| | ||||||| ||||||| ||| ||| ||||| | ||||| ||||||||||||||||||  |||| |||  ||||||| || |||| | |||    
T  5126743 tgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtt 5126644  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  5126643 tatctcatatatgatga 5126627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 5177930 - 5178036
Alignment:
Q  17 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 116  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| ||||||||||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5177930 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5178029  T
Q  117 atcatga 123  Q
    || ||||    
T  5178030 atgatga 5178036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 5279755 - 5279861
Alignment:
Q  17 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 116  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| ||||||||||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5279755 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5279854  T
Q  117 atcatga 123  Q
    || ||||    
T  5279855 atgatga 5279861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 5346210 - 5346326
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    ||||||||  |||||||| ||||||| ||| ||||||||| | ||||| ||| |||| |||||| ||| |||  |||  ||||||| || |||| || ||    
T  5346210 tgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatt 5346309  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  5346310 tatctcatatatgatga 5346326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 5689007 - 5688901
Alignment:
Q  17 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 116  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| |||||  |||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5689007 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5688908  T
Q  117 atcatga 123  Q
    || ||||    
T  5688907 atgatga 5688901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 36213035 - 36212919
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| ||||||| | ||||||| ||| ||||||||||||||| | ||| ||||||||||||||| ||||| ||  ||||||| || |||| |  ||    
T  36213035 tgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatt 36212936  T
Q  107 tatctcatatatcatga 123  Q
    |||||||| ||| ||||    
T  36212935 tatctcatttatgatga 36212919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 47985507 - 47985403
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| | ||||||| ||||||| ||| ||||| ||| | ||||| ||| | ||||||||||||| |||  |||  ||||||| ||||| | |||||    
T  47985507 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47985408  T
Q  107 tatct 111  Q
    |||||    
T  47985407 tatct 47985403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 48004081 - 48003977
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| | ||||||| ||||||| ||| ||||| ||| | ||||| ||| | ||||||||||||| |||  |||  ||||||| ||||| | |||||    
T  48004081 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48003982  T
Q  107 tatct 111  Q
    |||||    
T  48003981 tatct 48003977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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