View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10234_low_12 (Length: 284)
Name: NF10234_low_12
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_low_12 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 23552172 - 23552434
Alignment:
| Q |
22 |
acatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgtgagacttcagtttcaggatggagaccttgttgta |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |
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| T |
23552172 |
acatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgagagacttgagttttaggatggagaccttgttgta |
23552271 |
T |
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| Q |
122 |
ttctctgaagttcatggtatgaaagagttgaatgacagaaagccaagaaagattaaaaatgctagagcatattcattcactcttgaagaagacaccacaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23552272 |
ttctctgaagttcatggtatgaaagagttgaatgaccgaaagccaagaaagattaaaaatgctacagcatattcattcactcttgaagaagacaccacaa |
23552371 |
T |
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| Q |
222 |
actatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggttttgaact |
284 |
Q |
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| T |
23552372 |
actatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggttttgaact |
23552434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 22 - 284
Target Start/End: Complemental strand, 30834428 - 30834166
Alignment:
| Q |
22 |
acatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgtgagacttcagtttcaggatggagaccttgttgta |
121 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
30834428 |
acatactggaataattgcgtccattagcaatgacaaccctgctctagtttcttgtgttgatgatgagagacttgagtttcaggatggagaccttgttgta |
30834329 |
T |
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| Q |
122 |
ttctctgaagttcatggtatgaaagagttgaatgacagaaagccaagaaagattaaaaatgctagagcatattcattcactcttgaagaagacaccacaa |
221 |
Q |
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| T |
30834328 |
ttctctgaagttcatggtatgaaagagttgaatgacggaaagccaagaaagattaaaaatgctagagcatattcattcactcttgaagaagacaccacaa |
30834229 |
T |
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| Q |
222 |
actatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggttttgaact |
284 |
Q |
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| T |
30834228 |
actatggtgcctatgaaaaaggtggtattgtcacacagtccaaacaaccacaggttttgaact |
30834166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 22 - 284
Target Start/End: Complemental strand, 30815417 - 30815155
Alignment:
| Q |
22 |
acatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgtgagacttcagtttcaggatggagaccttgttgta |
121 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||| |||||||||||||| |
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| T |
30815417 |
acatactggaataattgcatccatcagcaatgacaaccctgctgtagtatcttgtgttgatgatgagagacttgagtttcaggacggagaccttgttgtg |
30815318 |
T |
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| Q |
122 |
ttctctgaagttcatggtatgaaagagttgaatgacagaaagccaagaaagattaaaaatgctagagcatattcattcactcttgaagaagacaccacaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30815317 |
ttctctgaagttcatggtatgaaagagttgaatgacggaaagccaagaaagattaaaaatgctagagcatattcattcactcttgaagaagacaccacaa |
30815218 |
T |
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| Q |
222 |
actatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggttttgaact |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30815217 |
actatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccaaaggttttgaact |
30815155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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