View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10234_low_13 (Length: 271)

Name: NF10234_low_13
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10234_low_13
NF10234_low_13
[»] chr5 (8 HSPs)
chr5 (103-264)||(3379876-3380036)
chr5 (82-159)||(3403224-3403300)
chr5 (82-159)||(3401854-3401930)
chr5 (5-78)||(3377823-3377895)
chr5 (82-159)||(3377933-3378009)
chr5 (152-201)||(3369196-3369245)
chr5 (102-159)||(3373740-3373796)
chr5 (152-201)||(3394813-3394862)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 264
Target Start/End: Original strand, 3379876 - 3380036
Alignment:
Q  103 tgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggtaatggcaattacttctcttgcaagggaacaacataagcagaaga 202  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||  |  |||||||||||||||||||||||||||||||||||||    
T  3379876 tgacaagtttattcaattctaattactcttt-ccaatggattgatatgtgtcaggtaacagtgattacttctcttgcaagggaacaacataagcagaaga 3379974  T
Q  203 atgatccagataaagatactagaaataactcaattgaccttaatttatagggcttcatctca 264  Q
    |||||||||||||| | || ||  |||||||||||||||||||||| |||||||||||||||    
T  3379975 atgatccagataaacaaacaagccataactcaattgaccttaatttgtagggcttcatctca 3380036  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 3403224 - 3403300
Alignment:
Q  82 tttgtggtaattagtacacagtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 159  Q
    |||||||||||||||||  |||||||||||||||||||| | || |||| ||||||||||||||||||||||||||||    
T  3403224 tttgtggtaattagtactaagtgacaagtttatgcaattatcatcactc-tttccaatggattgatatgtatcaggta 3403300  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 3401854 - 3401930
Alignment:
Q  82 tttgtggtaattagtacacagtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 159  Q
    |||||||||| || | | ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  3401854 tttgtggtaactaattctcagtgacaagtctatgcaattctcattactc-tttccaatggattgatatgtatcaggta 3401930  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 3377823 - 3377895
Alignment:
Q  5 aagtaaagttgatgatctagaaacatattttagtctcctgctaaagaaattggtacaatgtaacaaatgaatgc 78  Q
    |||||||||||||||||||| ||||| | ||||  ||||||||| ||||||||||| |||||||||||| ||||    
T  3377823 aagtaaagttgatgatctagtaacat-tattagggtcctgctaacgaaattggtactatgtaacaaatgtatgc 3377895  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 3377933 - 3378009
Alignment:
Q  82 tttgtggtaattagtacacagtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 159  Q
    |||||||||| || | | ||||||||||| ||||||||| |  ||||||||| ||| |||||||||||||||||||||    
T  3377933 tttgtggtaactaattctcagtgacaagtctatgcaattttcgttactcttt-ccagtggattgatatgtatcaggta 3378009  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 3369196 - 3369245
Alignment:
Q  152 atcaggtaatggcaattacttctcttgcaagggaacaacataagcagaag 201  Q
    |||||||||||| | |||||| ||||||||| ||||||||| ||||||||    
T  3369196 atcaggtaatggtagttacttttcttgcaagtgaacaacatgagcagaag 3369245  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 3373740 - 3373796
Alignment:
Q  102 gtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 159  Q
    ||||||||||||   |||||| | |||||||| |||||||||||||||||||||||||    
T  3373740 gtgacaagtttactgaattctcagtactcttt-ccaatggattgatatgtatcaggta 3373796  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 3394813 - 3394862
Alignment:
Q  152 atcaggtaatggcaattacttctcttgcaagggaacaacataagcagaag 201  Q
    |||||||||||| | |||||| ||||||||| ||||||||| ||||||||    
T  3394813 atcaggtaatggtagttacttttcttgcaagtgaacaacatgagcagaag 3394862  T

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