View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10234_low_18 (Length: 250)
Name: NF10234_low_18
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33355731 - 33355973
Alignment:
| Q |
1 |
atatttaaatgtattaacaatcctatattattatcaaatcgtctgtccaaaaaatattataaactttatgaattgtatttatttatcaa-ttactgaaaa |
99 |
Q |
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| T |
33355731 |
atatttaaatgtattaacaatcctatattattatcaaatcgtctgtccaaaaaatattataaactttatgaattgtatttatttatcaaattactgaaaa |
33355830 |
T |
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| Q |
100 |
tggtttgtatatgtcatgtgtctcaactctcaacgctttgaaaatggaaaccaagttacgtgtacataataacagagttctttgaacagtcatgcaaaat |
199 |
Q |
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| T |
33355831 |
tggtttgtatatgtcatgtgtctcaactctcaccgctttgaaaatggaaaccaagttacgtgtacataataacagagttctttgaacagtcatgcaaaat |
33355930 |
T |
|
| Q |
200 |
attg---tttcctacatgtttacttttgttcaatccaattctt |
239 |
Q |
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| T |
33355931 |
attgtttttttctacatgtttacttttgttcaatccaattctt |
33355973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 33381125 - 33381179
Alignment:
| Q |
113 |
tcatgtgtctcaactctcaacgctttgaaaatggaaaccaagttacgtgtacata |
167 |
Q |
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| T |
33381125 |
tcatctgtctcaactcttaacgctttgaagatggaaaccaagttccgtgtacata |
33381179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33379752 - 33379791
Alignment:
| Q |
1 |
atatttaaatgtattaacaatcctatattattatcaaatc |
40 |
Q |
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| T |
33379752 |
atatttaaatgtattaactatcctatattattatcaaatc |
33379791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 33399465 - 33399518
Alignment:
| Q |
120 |
tctcaactctc-aacgctttgaaaatggaaaccaagttacgtgtacataataac |
172 |
Q |
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| T |
33399465 |
tctcaactctctaacgctttgaacatggaaaccaagttccatgtacatattaac |
33399518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 39307804 - 39307669
Alignment:
| Q |
102 |
gtttgtatatgtcat--gtgtctcaactctcaacgctttgaaaatggaaaccaagttacgtgta------cataataacagagtt-ctttgaacagtcat |
192 |
Q |
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| T |
39307804 |
gtttgtatatgtcatttgtgtctcaactctcaacgctttgaacatcaaaaccaagttccgtgtagataatgataataacataattcctttgaacagtcat |
39307705 |
T |
|
| Q |
193 |
gcaaaata-ttgtttcctacatgtttacttttgttc |
227 |
Q |
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| T |
39307704 |
gcaaaatatttgttttcaacttgtttacttatgttc |
39307669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 43016309 - 43016348
Alignment:
| Q |
72 |
attgtatttatttatcaattactgaaaatggtttgtatat |
111 |
Q |
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| T |
43016309 |
attgtatttatttatcagttactgaaaatagtttgtatat |
43016348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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