View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10234_low_19 (Length: 250)
Name: NF10234_low_19
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20531721 - 20531482
Alignment:
| Q |
1 |
atcattaatggaagctgccactgcaatttctgaaggcaaaatggattatgctaaggagatcctctctagtttctcacatacacaaaacccaaaactaaaa |
100 |
Q |
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| T |
20531721 |
atcattaatggaagctgccactgcaatttctgaaggcaaaatggattatgctaaggagatcctctctagtttctcacatacacaaaacccaaaactaaaa |
20531622 |
T |
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| Q |
101 |
tttgacagttggttattggattgcattgcttcagcgctgaaatcgcgtgtgaataacattgaaaatccacctccagttgcagaattgttcagcaaagaac |
200 |
Q |
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| T |
20531621 |
tttgacagttggttattggattgcattgcttcagcgctgaaatcgcgtgtgaataacattgaaaatccacctccagttgcagaattgttcagcaaagaac |
20531522 |
T |
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| Q |
201 |
acactgattcaactcagcttctgtttgataactccctttg |
240 |
Q |
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| T |
20531521 |
acactgattcaactcagcttctgtttgataactctctttg |
20531482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 28297069 - 28296830
Alignment:
| Q |
5 |
ttaatggaagctgccactgcaatttctgaaggcaaaatggattatgctaaggagatcctctctagtttctcacatacacaaaacccaaaactaaaatttg |
104 |
Q |
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| T |
28297069 |
ttaatggaaactgccattgcgatttctgaaggcaaaatgaaatatgcgaaggagatcctctctcgtttctctcaaacacaaaactcaaaactgaaatttg |
28296970 |
T |
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| Q |
105 |
acagttggttattggattgcattgcttcagcgctgaaatcgcgtgtgaataacattgaaaatccacctccagttgcagaattgttcagcaaagaacacac |
204 |
Q |
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| T |
28296969 |
atcgttggttattggattgcatggcttcaacgctgaaatcgcgtgtgaataacattgaaaatccacctcctgtagtggaattgttcagcaaagaacatgc |
28296870 |
T |
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| Q |
205 |
tgattcaactcagcttctgtttgataactccctttgcttc |
244 |
Q |
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| T |
28296869 |
tgagtcgactcaccttctccttgatcactctctttgcttc |
28296830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 28295691 - 28295930
Alignment:
| Q |
5 |
ttaatggaagctgccactgcaatttctgaaggcaaaatggattatgctaaggagatcctctctagtttctcacatacacaaaacccaaaactaaaatttg |
104 |
Q |
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|||||||| | |||||| | ||||||| ||| |||||||| ||||| ||||||||||| ||| |||||| || ||||||||||||||||| || |||| |
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| T |
28295691 |
ttaatggatgttgccaccacgatttctggaggaaaaatggaatatgcgaaggagatcctttctcctttctctcaaacacaaaacccaaaactgaattttg |
28295790 |
T |
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| Q |
105 |
acagttggttattggattgcattgcttcagcgctgaaatcgcgtgtgaataacattgaaaatccacctccagttgcagaattgttcagcaaagaacacac |
204 |
Q |
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| T |
28295791 |
atcgttggttattagattgcatggctttagcgcttaaatcgcgtatggataacattgaaaatccacctccaataatggaattgtttagcaaagaacatgt |
28295890 |
T |
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| Q |
205 |
tgattcaactcagcttctgtttgataactccctttgcttc |
244 |
Q |
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| T |
28295891 |
tgagtcgactcaccttctccttgatcactctctttgcttc |
28295930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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