View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10234_low_20 (Length: 250)
Name: NF10234_low_20
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4498859 - 4498620
Alignment:
| Q |
1 |
cattttcgtccctcttgacagataaagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgataa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4498859 |
cattttcatccctcttgacagataaagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgatca |
4498760 |
T |
|
| Q |
101 |
agaaaatagcaatgcaaaccccccaaaaccctgctgcaaatccaactcccattcctatgtagaaatctaatgtgttgaagaaacctgcatcggaatttcc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4498759 |
agaaagtagcaatgcaaaccccccaaaaccctgctgcaaatccaactcccattcctatgtagaaatctgatgtgttgaagaaacctgcatcggaatttcc |
4498660 |
T |
|
| Q |
201 |
accctccaaaacttgtttaagtttggtacaattgttcatc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498659 |
accctccaaaacttgtttaagtttggtacaattgttcatc |
4498620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 4329074 - 4329289
Alignment:
| Q |
25 |
aagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgataaagaaaatagcaatgcaaacccccc |
124 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4329074 |
aagacaaaggtctcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgttaaagaaaatagcaatgcaaacccccc |
4329173 |
T |
|
| Q |
125 |
aaaaccctgctgcaaatccaactcccattcctatgtagaaatctaatgtgttgaagaaacctgcatcggaatttccaccctccaaaacttgtttaagttt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||| ||||| |||||||||| ||||||||||||||| | ||| |
|
|
| T |
4329174 |
aaaaccctgctgcaaatccaactcccattcctacgtagaaatctgatgtgtcaacgaaaccagcatcagaatttccacgctccaaaacttgtttcatttt |
4329273 |
T |
|
| Q |
225 |
ggtacaattgttcatc |
240 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
4329274 |
tgtacaattattcatc |
4329289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University