View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10234_low_21 (Length: 249)

Name: NF10234_low_21
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10234_low_21
NF10234_low_21
[»] chr8 (9 HSPs)
chr8 (1-189)||(23770920-23771108)
chr8 (1-189)||(5019427-5019619)
chr8 (12-99)||(23771082-23771169)
chr8 (16-79)||(5004813-5004876)
chr8 (16-99)||(5019593-5019673)
chr8 (25-99)||(5004865-5004936)
chr8 (16-93)||(5004938-5005016)
chr8 (16-62)||(5019799-5019845)
chr8 (55-99)||(5005005-5005049)
[»] scaffold0275 (6 HSPs)
scaffold0275 (12-189)||(20941-21118)
scaffold0275 (1-66)||(11650-11715)
scaffold0275 (16-99)||(11593-11676)
scaffold0275 (16-81)||(6131-6193)
scaffold0275 (23-99)||(6069-6142)
scaffold0275 (23-81)||(11790-11848)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 23771108 - 23770920
Alignment:
Q  1 aattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23771108 aattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagcc 23771009  T
Q  101 acacacgaacacataaataactcactaacacataaatttcaaacctataattgagtactttagtaactgctccaacattaataactgag 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23771008 acacacgaacacataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataattgag 23770920  T

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Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 5019619 - 5019427
Alignment:
Q  1 aattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtcc----ttctacaatacgattctcttttagccaacaacata 96  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||||||||||||||||    
T  5019619 aattctcttgtagctaacaatataagcaggtacacaataacaaacatgcataaattagtccaaccttctgcaatacgattctcttttagccaacaacata 5019520  T
Q  97 agccacacacgaacacataaataactcactaacacataaatttcaaacctataattgagtactttagtaactgctccaacattaataactgag 189  Q
    ||| ||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||    
T  5019519 agctacgtacgaacacataaataacccactaacacataaatttcaaacctataattgagtacttcaataactgctccaacattaataattgag 5019427  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 23771169 - 23771082
Alignment:
Q  12 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||  ||| ||||||||||||    
T  23771169 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagc 23771082  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 5004876 - 5004813
Alignment:
Q  16 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctc 79  Q
    |||||||||||||||| ||| |||| ||||||||||| |||||| |||||||||||| ||||||    
T  5004876 aacaacataagcaggtccacgataataaacatgcatacattagttcttctacaatacaattctc 5004813  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 5019673 - 5019593
Alignment:
Q  16 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 99  Q
    ||||||||| ||||   ||||||||||||||||||||||||||||   ||||||||| |||||||| |||| ||||| ||||||    
T  5019673 aacaacatatgcagacccacaataacaaacatgcataaattagtc---ctacaatacaattctcttgtagctaacaatataagc 5019593  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 5004936 - 5004865
Alignment:
Q  25 agcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 99  Q
    |||||||  ||||||| || ||||||||||||||||||||   ||||| |||||||| |||||||||||||||||    
T  5004936 agcaggtcgacaataataagcatgcataaattagtccttc---aatacaattctcttctagccaacaacataagc 5004865  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 5005016 - 5004938
Alignment:
Q  16 aacaacataagcaggtacacaataacaaacatgcataaattagtccttct-acaatacgattctcttttagccaacaac 93  Q
    |||||||||||||||| |||||||| || ||||||||||||||| ||||| | ||||| | |||||| ||| |||||||    
T  5005016 aacaacataagcaggtccacaataataatcatgcataaattagttcttctgaaaatacaaatctcttctaggcaacaac 5004938  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 5019845 - 5019799
Alignment:
Q  16 aacaacataagcaggtacacaataacaaacatgcataaattagtcct 62  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||    
T  5019845 aacaacataagcagacccacaataacaaacatgcataaattagtcct 5019799  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 5005049 - 5005005
Alignment:
Q  55 ttagtccttctacaatacgattctcttttagccaacaacataagc 99  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||    
T  5005049 ttagtccttctccaatacaattctcttatagccaacaacataagc 5005005  T

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Target: scaffold0275 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 20941 - 21118
Alignment:
Q  12 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaaca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20941 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaaca 21040  T
Q  112 cataaataactcactaacacataaatttcaaacctataattgagtactttagtaactgctccaacattaataactgag 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21041 cataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataactgag 21118  T

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Target: scaffold0275; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11650 - 11715
Alignment:
Q  1 aattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttcta 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11650 aattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttcta 11715  T

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Target: scaffold0275; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 11593 - 11676
Alignment:
Q  16 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 99  Q
    ||||||||||||||   |||| |||| |||||||||||||||||||||||| ||||| ||| ||||  ||| ||||||||||||    
T  11593 aacaacataagcagacccacagtaacgaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagc 11676  T

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Target: scaffold0275; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 6131 - 6193
Alignment:
Q  16 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctctt 81  Q
    ||||||| |||||||| |||||||| ||||||||||| |||||   ||||||||||| ||||||||    
T  6131 aacaacacaagcaggtccacaataataaacatgcatacattag---ttctacaatacaattctctt 6193  T

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Target: scaffold0275; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 6069 - 6142
Alignment:
Q  23 taagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 99  Q
    |||||||||  ||||||| || |||||||||||||||||||   ||||||  ||||||| |||||||||||| ||||    
T  6069 taagcaggtcgacaataataagcatgcataaattagtcctt---caatacagttctcttatagccaacaacacaagc 6142  T

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Target: scaffold0275; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 11790 - 11848
Alignment:
Q  23 taagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctctt 81  Q
    |||||||||  ||||||| || |||||||| |||||||||||||| |||| ||||||||    
T  11790 taagcaggtcgacaataataagcatgcatatattagtccttctacgatacaattctctt 11848  T

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